Gene Sama_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0008 
SymboltrmE 
ID4602265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp6502 
End bp7863 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content57% 
IMG OID639779317 
ProducttRNA modification GTPase TrmE 
Protein accessionYP_925890 
Protein GI119773150 
COG category[R] General function prediction only 
COG ID[COG0486] Predicted GTPase 
TIGRFAM ID[TIGR00450] tRNA modification GTPase TrmE
[TIGR00231] small GTP-binding protein domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.185087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000721309 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGACGACAG ACACCATAGT GGCACAGGCC ACCGCGCCCG GTCGGGGCGG CGTAGGCATC 
ATCCGGGTAT CCGGTAAGCT GGCAAGCGAT GTTGCCCATA CCCTGCTGGG ACACCTGCCC
AAACCCCGCT ACGCCGATTT CTGCGACTTC AAAGCGGCCG ATGGCAGCGT GATTGACCAG
GGTATTGCCC TTTTCTTCAA AGGCCCCAAC TCCTTTACCG GCGAAGATGT ACTGGAGCTG
CAGGGCCACG GCGGCCAGGT GGTGATGGAC ATGCTCATCC GCGCCGTGCT CAAGGTCAAA
GGAGTGCGTA TTGCCCGCCC CGGTGAGTTC AGCGAGCAAG CCTTTATGAA CGACAAGCTG
GATTTGACCC AGGCCGAAGC CATCGCAGAC CTGATTGATG CCACCAGCGA ACAGGCCGCC
AAGAGTGCCC TGCACTCACT GCAAGGCGAG TTCTCCACTC AGGTGCATAC CCTGGTGGAC
AAAATAACTA ACCTGCGCCT GTATGTAGAA GCCGCCATCG ACTTTCCCGA CGAAGAAGTG
GATTTCTTAA GTGACGGCAA AATAGCCGCC GCCCTTTACG CCATTATCGA CCAACTTGAT
GAAGTGCAGG CCAGTGCAAA ACAGGGCAGC ATTATCCGTG AAGGCATGAA AGTGGTGATT
GCCGGGCGCC CCAACGCCGG TAAATCCAGC CTGCTCAATG CCCTGGCAGG GAAAGAATCG
GCCATTGTGA CCGACATAGC CGGCACCACC CGCGACGTAC TGCGAGAGCA TATTCACCTC
GACGGCATGC CGCTGCACAT TATTGATACC GCCGGTCTGC GGGACACCAC AGACGAAGTG
GAGCGTATCG GTATAGAGCG CGCCTGGAGC GAAATAGCCA GCGCCGATCG GGTGCTGTTT
ATGGTGGATG GCACAGACAC TGCCGCCGTT GACCCCCACG AGATATGGCC CGATTTTATC
GACCGCCTGC CCAAAGCCAT GGGGGTTACC GTGGTCCGTA ACAAGGCTGA TCTGACCGGT
GAACCTTTGG AAGCCACCGA AGAGCAAGGC TACAGCGTGT ATCGGATTTC GGCCAAAACC
GGCCTGGGTG TGGACGCTCT CAAGCAGCAC CTCAAATCCC TGATGGGTTA TCAAAGTAAC
CTCGAAGGCG GCTTTATCGC CCGTCGTCGT CACCTCGAAG CATTGGAGCA GGCATCTGAG
CACCTGCAAC TGGGCAAGGT ACAGCTGGAA GTATATCTGG CAGGTGAGCT GCTGGCAGAA
GAGCTGCGGA TGGCACAGCA GGCACTGTCT GAAATTACCG GCGAATTTAC CTCAGACGAC
TTGCTGGGCA AGATTTTCAG TTCTTTCTGT ATCGGTAAGT AA
 
Protein sequence
MTTDTIVAQA TAPGRGGVGI IRVSGKLASD VAHTLLGHLP KPRYADFCDF KAADGSVIDQ 
GIALFFKGPN SFTGEDVLEL QGHGGQVVMD MLIRAVLKVK GVRIARPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALHSLQGE FSTQVHTLVD KITNLRLYVE AAIDFPDEEV
DFLSDGKIAA ALYAIIDQLD EVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTDIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDEV ERIGIERAWS EIASADRVLF
MVDGTDTAAV DPHEIWPDFI DRLPKAMGVT VVRNKADLTG EPLEATEEQG YSVYRISAKT
GLGVDALKQH LKSLMGYQSN LEGGFIARRR HLEALEQASE HLQLGKVQLE VYLAGELLAE
ELRMAQQALS EITGEFTSDD LLGKIFSSFC IGK