| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0005 |
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| Symbol | |
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| ID | 4602262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3686 |
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| End bp | 4558 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639779314 |
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| Product | LysR, substrate-binding |
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| Protein accession | YP_925887 |
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| Protein GI | 119773147 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000616557 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCTGGG AAGGGATTTG TGAATTTGTT GCCGTAGCCG AAGCGCAAAG CTTTACCGCT
GCAGCTGGCC GGCTTGGGAT CAGTACGGCG CAGGTGAGCC GGCAGGTGCG GGAGCTCGAA
GAGCGCCTCG GCAGCAAACT TCTGTATCGC ACTACACGTA AGGTGTCGCT GACCGAAGAC
GGTCAGCTGT TTTACCGCCA TTGCCGCCAG GTGCTGGATG GCTTGGATGA AGCCGAGCGG
GCAGTGTCGT CACTGAAGAG CGAACCGCGT GGGCTTATCC GTATGACGGC GCCTGTTACC
TACGGTGAGC AGTACGTGAT GCCGATAGTG CTCGCGTACA TGCAGCAATT TCCCCAGGTG
GAAGTGCAGT GTGAGCTCAC TAATCAACAG CTCGATTTGG TGCAGGGCGG TTTTGATTTG
GCGATTCGCC TCGGTGTGCT GCCGGATTCT TCCATGATGG CGCGAAAGCT GGCCGAGCGG
GTGCAGTATC TGGTGGCATC ACCGGATTAT GTCAGCCGCC ACGGCGCGCC CCATTCGCTT
TCAGAGCTCA GTCGTCACCA GTGTTTGCTG GGGAGCCTGC CATTTTGGCG CTTTCAGGAA
GAGGGCAAGC TTCGCAGCCT GAAGGTGAAG GGGAGGCTCA GTTGCAGCAG CGGCAATACC
TTGCTGGCTG CGGCACTGGC GGGCATGGGG ATAGCTCAAT TGCCCGGCTA TTATGTAGAT
GAAGCCATTC GTGACGGCCG CTTGCTGGTG CTGCTCAAAC CATTTCAGGA GCCCAAAGAA
GGCATTTGGG GCCTGTATCC CCATAATCGG CAGCTGTCAC CCAAGATTGG CCATCTGATG
AATATGCTGG CAGACAAGTT GCCCAAAGCC TGA
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| Protein sequence | MRWEGICEFV AVAEAQSFTA AAGRLGISTA QVSRQVRELE ERLGSKLLYR TTRKVSLTED
GQLFYRHCRQ VLDGLDEAER AVSSLKSEPR GLIRMTAPVT YGEQYVMPIV LAYMQQFPQV
EVQCELTNQQ LDLVQGGFDL AIRLGVLPDS SMMARKLAER VQYLVASPDY VSRHGAPHSL
SELSRHQCLL GSLPFWRFQE EGKLRSLKVK GRLSCSSGNT LLAAALAGMG IAQLPGYYVD
EAIRDGRLLV LLKPFQEPKE GIWGLYPHNR QLSPKIGHLM NMLADKLPKA
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