Gene Sama_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0003 
Symbol 
ID4602260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1522 
End bp2367 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content56% 
IMG OID639779312 
Productcarboxylesterase 
Protein accessionYP_925885 
Protein GI119773145 
COG category[R] General function prediction only 
COG ID[COG0627] Predicted esterase 
TIGRFAM ID[TIGR02821] S-formylglutathione hydrolase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000616557 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGCTGG AATTAGTCAG TGCCAATCGC AGTTTTGATG GCTGGCACAA ACAGTACAGT 
CATCAATCCA GCAGCCTGGA TTGCAAGATG CGCTTTGCGA TTTTTCTGCC GCCCCAGGCC
GAAACCCAAA GCGTACCAGT GCTTTATTGG CTGTCAGGGC TCACCTGCAG CGATGAAAAC
TTCATGCAGA AGGCAGGCGC TCAGCGCCTG GCCGCGACGC TCGGGCTTGC GATTGTTGCC
ATGGACACCA GCCCCCGCGG CGAAGGTGTG GCCGACGATC CCGATGGCGC CTGGGACTTT
GGCCTGGGGG CGGGCTTTTA TCTCAATGCC ACTGAAGCGC CCTGGAATAA ACACTACCGC
ATGTACGATT ATGTGGTGAA AGAGCTGCCG AAGCTGATTG AAACCAACTT TCCGGTCAGC
AGCAAACGCA GCATTGCCGG CCATTCCATG GGCGGCCACG GCGCCCTGAC AATAGCGCTG
AAAAACCCCG GTCGCTATGC CAGCGTGTCG GCCTTCAGCC CTATTTGTAA TCCAAGCCAA
AGCCCCTGGG GACAAAAGGC CTTTGGCAAT TACCTGGGCA AAGACAGGGA AAGCTGGCGC
GAGTATGACA GCTGTGAATT GATTGGCCGC GGCGCCGAAC CTATCCCCAT GCTGGTGGAT
CAAGGTGATG CGGACAGCTT TTTAGAGGCA GAGCTCATGC CGCAGCGTCT GCAACATGCC
GCAGACAATG CCGACTTTCC GCTGAATCTG CGAATGCAGC CTGGCTACGA TCACAGCTAC
TACTTTATCG CGAGCTTTAT CGATGAACAC CTGGAGTTTC ATCATCACTG GTTGACCCGG
AGATAA
 
Protein sequence
MTLELVSANR SFDGWHKQYS HQSSSLDCKM RFAIFLPPQA ETQSVPVLYW LSGLTCSDEN 
FMQKAGAQRL AATLGLAIVA MDTSPRGEGV ADDPDGAWDF GLGAGFYLNA TEAPWNKHYR
MYDYVVKELP KLIETNFPVS SKRSIAGHSM GGHGALTIAL KNPGRYASVS AFSPICNPSQ
SPWGQKAFGN YLGKDRESWR EYDSCELIGR GAEPIPMLVD QGDADSFLEA ELMPQRLQHA
ADNADFPLNL RMQPGYDHSY YFIASFIDEH LEFHHHWLTR R