| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3477 |
|---|
| Symbol | |
|---|
| ID | 4595574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3687144 |
|---|
| End bp | 3687731 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639778083 |
|---|
| Product | ClpP1 peptidase. Serine peptidase. MEROPS family S14 |
|---|
| Protein accession | YP_924664 |
|---|
| Protein GI | 119717699 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTGC TCGACGACCA CATCTACCAG CGGCTGCTGC GCGAGCGGAT CGTCTTCCTC
GGCTCCGAGG TGCGTGACCA GAACGCGAAC GCGATCTGCG CCCAGCTGCT GCTGCTCTCG
GCGGAGGACC CCGAGGCGGA CATCTTCCTC CACATCAACT CGCCCGGTGG CTCGGTCGAC
GCGGGCATGG CGATCTACGA CACCATGAAC TACATCCCCA ACGACGTCGC CACCGTCGGG
ATGGGGCTGG CCGCCTCGAT GGGCCAGTTC CTGCTCTGCG CGGGCACCAA GGGCAAGCGC
TACGCGCTGC CGCACGCGCG GATCATGATG CACCAGCCCT CCTCCGGCAT GGGCGGCTCG
GCCTCGGACA TCAAGATCCA GGCCCAGCAG TCGCTGCACA TCAAGAAGGT CCTGCTCGAG
CTGATCGCCG AGCACACCGG CCAGACGGTC GAGCAGATCG AGATGGACGC CGACCGCGAC
CGGTGGTTCA CCGCCGACCA GGCCAAGGAG TACGGCCTGG TCGACCAGGT CATCAAGAGC
GCTCGCGAGG CCGCCGACGA CGGCCGCCCG GCCCGGCAGA AGGACTGA
|
|---|
| Protein sequence | MNVLDDHIYQ RLLRERIVFL GSEVRDQNAN AICAQLLLLS AEDPEADIFL HINSPGGSVD
AGMAIYDTMN YIPNDVATVG MGLAASMGQF LLCAGTKGKR YALPHARIMM HQPSSGMGGS
ASDIKIQAQQ SLHIKKVLLE LIAEHTGQTV EQIEMDADRD RWFTADQAKE YGLVDQVIKS
AREAADDGRP ARQKD
|
|---|
| |