| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3217 |
|---|
| Symbol | |
|---|
| ID | 4599155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3415260 |
|---|
| End bp | 3416318 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639777823 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_924406 |
|---|
| Protein GI | 119717441 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0511175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGG CGATCTCCGT GCGGGGGCTG AGCAAGTACT TCGGTGACGT GCGCGCGGTG
GACGATCTGG ACCTCGACAT CGCCGACGGC GAGTTCTTCT CCATGCTCGG TCCCTCCGGC
TCGGGGAAGA CCACTGTCTT GCGCCTGATC GCCGGCTTCG AGGAGCCCAG CGCGGGAGTG
ATCATGCTCG GCGGCGAGGA CGTGACCCGG CGGCCGCCGT TCGCCCGCGA CGTCAACACG
GTCTTCCAGG ACTACGCGAT CTTCCCTCAC CTCAGCGTCC GCCAGAACGT CGAGTACGGG
CTGCGGGTGA AGAAGGTCCC CGGTGCCGAA CGCCGCCGCC GCGCCGAGCA GGCGCTGGCG
ACCATGCGCC TCGAGGGGTA CGCCGAGCGC CGGCCGCACC AGCTCTCCGG CGGGCAGCGG
CAACGTGTCG CGCTGGCCCG CGCGCTGGTG AACCGGCCGC AGGTGCTGCT CCTCGACGAG
CCGCTGGGCG CCCTGGACCT CAAGCTGCGC CGCGAGATGC AGATCGAGCT GAAGGAGATC
CAGCGCGAGG TCGGGATCAC GTTCGTCTTC GTCACCCACG ACCAGGAGGA GGCGCTCACG
ATGAGCGACC GCATCGCGGT CTTCAACGAG GGCCGCATCG AGCAGCTCGC GAGCCCCGTC
GAGCTCTACG AGCGGCCGGC CAGCGCGTTC GTCGCTGGCT TCGTCGGCAC CTCCAACCTG
CTCCAGGGTG ACGTCGCACG TGACCTGGTC GGGGAGCCGG GCCCGTTCGT GATCCGGCCC
GAGAAGCTGC AGCTGGTCGC CGAACCCGCT CGCGAGCCGG GTCTGGTGAC GGCTCCCGGC
GTGGTGCGCG AGGTCGTCTA TCTCGGGGCG TCCACGATGT CGGTCGTCGA GCTCGAGGCC
GGCCCCACGG TGACGGTGTC GCACCCGAAC ACCGACACCT CGATCGACGC CGCGCTCGAA
CGACGCGACC AGCGCGTCGT CGTCACGTGG CGTCGTGACC ACCTGGTGTC CCTGGGTTCC
CCCGACCCAG CGGCGTCCCC TGAGGAGGAG ACAGCATGA
|
|---|
| Protein sequence | MATAISVRGL SKYFGDVRAV DDLDLDIADG EFFSMLGPSG SGKTTVLRLI AGFEEPSAGV
IMLGGEDVTR RPPFARDVNT VFQDYAIFPH LSVRQNVEYG LRVKKVPGAE RRRRAEQALA
TMRLEGYAER RPHQLSGGQR QRVALARALV NRPQVLLLDE PLGALDLKLR REMQIELKEI
QREVGITFVF VTHDQEEALT MSDRIAVFNE GRIEQLASPV ELYERPASAF VAGFVGTSNL
LQGDVARDLV GEPGPFVIRP EKLQLVAEPA REPGLVTAPG VVREVVYLGA STMSVVELEA
GPTVTVSHPN TDTSIDAALE RRDQRVVVTW RRDHLVSLGS PDPAASPEEE TA
|
|---|
| |