| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2407 |
|---|
| Symbol | alaS |
|---|
| ID | 4599507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2566293 |
|---|
| End bp | 2568983 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639777010 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_923599 |
|---|
| Protein GI | 119716634 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.714506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCG CGGAGATTCG CCGACGGTTC GTGGCTCACT TCGAGCACAA CACCACCGTC
GGGGCGCACA CCCCGGTGCC GTCCGCGTCG CTGCTGCTCG ACGACCCCAA CCTGTTGTTC
GTCAATGCCG GCATGGTGCC GTTCAAGCCG TACTTCCTCG GCCAGGAGGC GCCGCCGTAC
CCGCGCGCCA CGAGCGTGCA GAAGTGCGTG CGCACGCCCG ACATCGAGGA CGTCGGCAAG
ACCACCCGGC ACGGCACGTT CTTCGAGATG TGCGGCAACT TCTCCTTCGG CGACTACTTC
AAGGAGGGCG CCATCGAGCT GGCCTGGGAC CTGGTCACCA GGCCCCTCGC CGACGGCGGC
TGGGGCCTGG AGGAGAGCAA GCTCTACCCG AGCGTCTACG AGGACGACCC GGAGGCGGTG
GCGCTGTGGA AGAAGGTCAC CGGCCTGCCG GAGGAGCGGA TCATCCGGCT CGGCAAGCGC
GAGAACTACT GGTCGATGGG CGTCCCCGGC CCGGGTGGGC CGTGCTCGGA GATCCTCTAC
GACCGCGGCC CGGACTACGG CCCGGACGGT GACTTCGGAC CCAAGGGCGA GGACCGCTAC
CTCGAGATCT GGAACCTCGT CTTCATGCAG GACGAGCTGA GCGCGGTGCG GTCCAAGGAG
GACTTCGACA TCGCAGGCTC GCTGCCGAAG AAGAACATCG ACACCGGCAT GGGCCTGGAG
CGGGTCGCGT TCCTGCTGCA GGGCAAGGCC AACATGTACG AGATCGACGT GATGTTCCCG
GTGATCCAGA AGGCCGAGGA GCTCACCGGC CGGCGCTACG GCGCCGATCA TGACGACGAC
GTGCGGTTCC GCGTCGTCGC CGACCACGTC CGCAGCTCGA TGATGCTGAT CGGCGACGGC
GTCACCCCCG GCAACGAGGC TCGCGGCTAC GTCCTGCGCC GGCTGCTGCG CCGCGCGGTG
CGCTCGATGC GGCTGCTCGG CTACGAGGAC CCGGCGCTGC CCGAGCTGTT CCCGATCAGC
CGGGACAAGA TGGGGGAGAC CTACACCGCG CTGCACCGCG ACTGGGAGCG GATCTCCACG
GTCGCGTACG CCGAGGAGCA CGCGTTCCGC CAGACCCTGC GCTCCGGCAC CACGATCTTC
GACCAGGCCA CCGCCGAGCT GAAGCAGGCC GGTGGCAGCC AGCTGTCGGG CGACAAGGCG
TTCGCACTGC ACGACACCTA CGGCTTTCCG ATCGACCTCA CCCTGGAGAT GGCGGCCGAG
CAGGGGCTCG CGGTCGACGA GGTCGGCTTC CGGCGGCTGA TGAACGAGCA GCGGCAGCGG
GCCAAGGACG ACGCCAAGGC GAAGAAGGGC CAGCATCGCG ACGCCTCGGC GTACCGCCAG
GTCGCCGACT CCCTGGGCCG CCCGGTCGAG TTCACCGGCT ACGACGTGGT CACCGACGAG
GCGTCCGTGC GCGGCCTGGT CGCCGCCGGG GGTGTGGTGT CCTCCGCCGG CCCGGGCGAC
GACGTCGAGA TCATCCTCGA CCGCACCCCG TTCTACGCCG AGGGCGGCGG CCAGCTCGCC
GACCAGGGTG TGATCGAGCT CGACAACGGG GCCCGGGTCG AGGTCCGCGA CGTGCAGTCC
CCGGTCAGGG GGCTGATCGT GCACCACGCC ACGGTGCTCT CCGGAGAGGT CAGCATTGGC
CTCGGCGCCC ATGCCCTGGT CGACGTCGAG CGGCGACGAT CGATCTCCCG GTCCCACACC
GCGACCCACA TGGTGCACAA GGCCTTCCGC GAGGCGCTCG GCGAGACCGC GACCCAGGCC
GGGTCGGAGA ACTCCCCGGG CCGGTTCCGG TTCGACTTCT CCGCGGTCGG GGCGGTGCCG
GAGTCGGTGA TGGCCGACGT CGAGGCGCGC GTGAACGAGG TCGTCCTCGA CGACCTCGCG
GTGCACGCCG AGGTGATGAG CCAGGCCGAC GCGGTGAAGT CCGGGGCGAT GGCGCTGTTC
GGCGAGAAGT ACGGCGACCG GGTCCGCGTG GTCTCGGTGG GCGACTGGGC GCGCGAGCTG
TGCGGCGGCA CCCACGCCGG CAGCTCCGGC AAGCTGGGCG TGGTCAAGCT GCTCGGCGAG
TCGTCCATCG GCTCGGGTGT GCGGCGCGTC GAGGCCCTGG TCGGCAGCGA CGCCTACCGG
TTCCTGGCCC GCGAGCACGT CCTGGTCGCT CAGCTCTCCG ACACGCTCAA GGTCCGGCCC
GAGCAGCTGC CCGAGCGGGT CCACGACCTG GTCGAGAAGC TCCGCGAGGC GGAGAAGGAG
ATCGAGAGGG TCCGGGTCGG GCAGCTGCTC GCCGCAGCCG GCGAGCTCGC CGCGGGCGCG
GCGAAGGTCG GGCCGGTCAA CCTGGTCGCG CACCGGGCCG ACGGCGCCGG TGGCGGCGAC
GTCCGCACGC TGGCGCTCGA CGTCCGCGGC CGGCTCCCGC AGGGCGAGCC GGGCGTGGTC
GTGGTCATCG GAGCCGTCGA CGGCAAGGTG GCGGTGGTCG CGGCGCTCAA CGACGAGGCG
CGGGCCCGCG GGCTCAGCGC GAACGAGCTG GTCCGCGCCG TCGGCCCGCT CGTCGGCGGC
AAGGGCGGTG GCAAGGACGA CGTCGCGCAG GGCGGCGGCA CCGACGCCTC GCGCATCGAC
GAGGCGATCA CGCTGGTGAC CGCCGAGGTC GGGCGGGTGG CCGCCGGCTG A
|
|---|
| Protein sequence | MDTAEIRRRF VAHFEHNTTV GAHTPVPSAS LLLDDPNLLF VNAGMVPFKP YFLGQEAPPY
PRATSVQKCV RTPDIEDVGK TTRHGTFFEM CGNFSFGDYF KEGAIELAWD LVTRPLADGG
WGLEESKLYP SVYEDDPEAV ALWKKVTGLP EERIIRLGKR ENYWSMGVPG PGGPCSEILY
DRGPDYGPDG DFGPKGEDRY LEIWNLVFMQ DELSAVRSKE DFDIAGSLPK KNIDTGMGLE
RVAFLLQGKA NMYEIDVMFP VIQKAEELTG RRYGADHDDD VRFRVVADHV RSSMMLIGDG
VTPGNEARGY VLRRLLRRAV RSMRLLGYED PALPELFPIS RDKMGETYTA LHRDWERIST
VAYAEEHAFR QTLRSGTTIF DQATAELKQA GGSQLSGDKA FALHDTYGFP IDLTLEMAAE
QGLAVDEVGF RRLMNEQRQR AKDDAKAKKG QHRDASAYRQ VADSLGRPVE FTGYDVVTDE
ASVRGLVAAG GVVSSAGPGD DVEIILDRTP FYAEGGGQLA DQGVIELDNG ARVEVRDVQS
PVRGLIVHHA TVLSGEVSIG LGAHALVDVE RRRSISRSHT ATHMVHKAFR EALGETATQA
GSENSPGRFR FDFSAVGAVP ESVMADVEAR VNEVVLDDLA VHAEVMSQAD AVKSGAMALF
GEKYGDRVRV VSVGDWAREL CGGTHAGSSG KLGVVKLLGE SSIGSGVRRV EALVGSDAYR
FLAREHVLVA QLSDTLKVRP EQLPERVHDL VEKLREAEKE IERVRVGQLL AAAGELAAGA
AKVGPVNLVA HRADGAGGGD VRTLALDVRG RLPQGEPGVV VVIGAVDGKV AVVAALNDEA
RARGLSANEL VRAVGPLVGG KGGGKDDVAQ GGGTDASRID EAITLVTAEV GRVAAG
|
|---|
| |