Gene Noca_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_2019 
Symbol 
ID4598641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp2162401 
End bp2164926 
Gene Length2526 bp 
Protein Length841 aa 
Translation table11 
GC content76% 
IMG OID639776623 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_923216 
Protein GI119716251 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00459182 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCACGG ACCAGTTCGC CCGGGTCGCC GTACCCGCTC GCGAGCTGGA CCTGACCCTC 
CTCGGCGGCC ACCCCGACGA CCCCGCGCTC GTCACCGGCG ACCGCACGGT GACCTACGCC
GAGCTGGCCG CGCTCGTGCA GCGCCGCGCG CTCGAGCTCG ACGACCCGGG CCGGCTGCTG
CTGCTCGAGA TGGCCAACGA CCTGCCCAGC GTCGTGACCT ACCTGGCCGC CCTCGCGCTC
CACCGCCCCG TGGTGATCGC CACCCCCGGC GCGCACGACG ACATCGCCCG GACCTACCGG
CCGGCGCTGG ACGCCGACGC CCCGCCGCCG CTGCACCCCG ACCTGGCCGT GCTGCTGTCG
ACCTCGGGCT CCACTGGCTC ACCCAAGCTG GTCCGGCTCT CCCGCGCCAA CGTGGTCGCC
AACGCGCGGA GCATCGCCGA CTACCTCGGC ATCCGCCGCT CCGACCGGGC GCTCACCTCG
CTCCCCCTGC ACTACTGCTA CGGCCTCTCG GTGCTCAACA GCCACCTGGT CGCCGGGGCC
GCGGTGGTGC TGACCGACCT GTCGGTGGCC GACGAGTGCT TCTGGGACCT GGCCCGCACC
CACCGGGCGA CGACGTTCGC CGGCGTCCCC TACACGTTCG ACCTGCTGGA CGCGACCGGC
TTCGCCGACC GCGACCTGCC GCACCTGCGC TACGTCACCC AGGCCGGCGG CCGGCTCGCG
CCCGAGACGG TGGTGCGGTA CGCCGAGCTC GGGCAGCGCC GCGGCTGGGA CCTGTTCGTG
ATGTACGGCC AGACCGAGGC CACCGCCCGG ATGGCGTACC TGCCGCCCAC GCTGGCGCCG
ACCCGGCCGG AGGCGATCGG GGTCGCCGTA CCGGGGGGGA CGCTGCGGGT GGACCTGGAC
GGGCCCGGCC GCGAGGGCCT GCCCGCGGAC GTCGGCGAGC TCGTCTACGG CGGCCCGAAC
GTGATGATGG GCTACGCCCA CGGGCCCGCG GACCTGGCCC GGGGCGCCGA GCTGACCGAG
CTGCGCACCG GCGACCTGGC CCGGCGCGGT CCGGACGGGC TGTGGGAGGT CGTCGGCCGG
CTGAACCGCA CCGCCAAGGT GTTCGGCCTG CGGCTCGACC TCGACCGGAT CGAGCGCCGG
CTGGCCACCG CGGGTGCCCC GGCGCGGGCA GTGGTCGTCG GCGAGGGCCT GCACCTGTTC
ACGACCCGGC CCCGCGACCG GCGCGTGCTG CCCACCCACC TGGCGCGGAT CGCCGGCATC
CCGGCCGGCA CCGTGACCGC CCACGTGGTC GAGACCGTGC CGACGACCGC GTCCGGCAAG
TGCGACTACG CCGCGCTGCG CCGCCAGGCC GAGGCCGCGC TCGCGCTGGC CGAGCCGGAC
GCCGGATCCG AGGCGGCGCC GGCGTACGGC GACGTCACCG GCCTGCGCGA CCTGTACGCC
GTCCTCCTCG GCCGCCCGGA CGCCACCGCG CAGGACACCT TCGTCGGGCT CGGCGGCGAC
TCGCTGTCCT TCGTCGAGCT CTCGACCCGG CTCGCGGCCC GGATCGGACA CCTGCCCGCG
GACTGGCCGC ACCGGTCGAT CGAGTCACTG GCCCTGGAGT CCCGGCCGGC CCGCCGGTTC
ACGACGCCGG TCGAGCTCGG CGTCGTGCTG CGGGCCGTGG CGATCATCCT GATCGTCGTC
ACGCACGTCG ACGTCGTGCA CCTGCTCGGC GGGGCGCACG TGCTGCTCGC GCTGGTCGGC
TACCACCTGG CCCGGTTCGG CCTGGCCGTC GACGGGCGGC GGACCCGGAC CCGGCGGCTG
CTCGTCGGCC TGGCCGGGGT CGCCGTTCCT GCCTCGCTGT GGATCGGCGG CGCCGCCCTC
CTCACCGGGG AGTACCGCCC GGCCACGGCG CTGTACCTCA ACGGCGTGGT CGGCGAGAGC
CGGTGGAGCG ACGACTGGCA GTTCTGGTTC CTCGACGTGC TGGTCTGGGG CACGCTCGCG
GTCGCCCTGG CGCTCGCGGT GCCGTGGGTG GACCGCCGCC AGCGGCGCTC GCCGTACGCC
GTCGCGCTGG TGGCGCTCGT GGCCGCCCTG GGGCTGCGCT ACGCCACCGT CGGGGTGAGC
GCGGACCTGA CCGAGAAGTA CACCGTGGCC GGCAGCCTGT GGCTGATCGC GCTCGGGTGG
GCGGTCGCGG AGGCGCGCAC CCGGACCCAG CGGCTGGTGG TCGCGGCGGT CGCGGCGCTC
GGGCTGGTGG GGTTCTTCCC CGGCGAGCCG AGTCGTACGG CGATCGTCGG CATCGGCGTG
CTCCTGCTGC TGTGGGCCCG ACCCGTGCCG GTCCCCACGG TCCTGGCCGC GCCGCTGCGC
GTGGTCGCGG GCGCGTCGCT GTGGATCTAC CTGACGCAGT GGCAGGTCTA CCCCGGGCTC
GAGGCGGCCG GGCGGCCCGC GCTCGCGATC GGCGCCTCGC TGGCGGTGGG CGTGGCGTGC
TGCTGCGCCT ACACCCGGCT GGAGCGGGCG GTGCGGCCGC GGCTCAGCAG GAGACGCCGA
GGCTGA
 
Protein sequence
MTTDQFARVA VPARELDLTL LGGHPDDPAL VTGDRTVTYA ELAALVQRRA LELDDPGRLL 
LLEMANDLPS VVTYLAALAL HRPVVIATPG AHDDIARTYR PALDADAPPP LHPDLAVLLS
TSGSTGSPKL VRLSRANVVA NARSIADYLG IRRSDRALTS LPLHYCYGLS VLNSHLVAGA
AVVLTDLSVA DECFWDLART HRATTFAGVP YTFDLLDATG FADRDLPHLR YVTQAGGRLA
PETVVRYAEL GQRRGWDLFV MYGQTEATAR MAYLPPTLAP TRPEAIGVAV PGGTLRVDLD
GPGREGLPAD VGELVYGGPN VMMGYAHGPA DLARGAELTE LRTGDLARRG PDGLWEVVGR
LNRTAKVFGL RLDLDRIERR LATAGAPARA VVVGEGLHLF TTRPRDRRVL PTHLARIAGI
PAGTVTAHVV ETVPTTASGK CDYAALRRQA EAALALAEPD AGSEAAPAYG DVTGLRDLYA
VLLGRPDATA QDTFVGLGGD SLSFVELSTR LAARIGHLPA DWPHRSIESL ALESRPARRF
TTPVELGVVL RAVAIILIVV THVDVVHLLG GAHVLLALVG YHLARFGLAV DGRRTRTRRL
LVGLAGVAVP ASLWIGGAAL LTGEYRPATA LYLNGVVGES RWSDDWQFWF LDVLVWGTLA
VALALAVPWV DRRQRRSPYA VALVALVAAL GLRYATVGVS ADLTEKYTVA GSLWLIALGW
AVAEARTRTQ RLVVAAVAAL GLVGFFPGEP SRTAIVGIGV LLLLWARPVP VPTVLAAPLR
VVAGASLWIY LTQWQVYPGL EAAGRPALAI GASLAVGVAC CCAYTRLERA VRPRLSRRRR
G