| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2018 |
|---|
| Symbol | |
|---|
| ID | 4598640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2161203 |
|---|
| End bp | 2162423 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 639776622 |
|---|
| Product | phosphoribosyltransferase |
|---|
| Protein accession | YP_923215 |
|---|
| Protein GI | 119716250 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG0412] Dienelactone hydrolase and related enzymes
[COG1926] Predicted phosphoribosyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00136436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTCG ACCGGATCGA CGGTGGCCGG CGGCTCGCTG CCCTGCTCTC GCACTTCACG
GGCACCAACG TCGTGGTCGT CGGCCTGCCC CGCGGCGGGG TGCCGGTGGC CGCGGAGGTC
GCCTACCAGC TGCGCGCGCC GCTGGACGTG ATCGTGGTCC GCAAGCCCGG CCTGCCGGGG
GAGCCGGAGC TCACCGACCC CGAGCGCGCC GCCCTGCGCG AGCGCGCCAC CCAGCTGCGC
AGCGGCCGGT CCGGCCTGGA TCTCTCCGGC CGGGTGGCGC TGATCGTCGA CGACGGCATC
GCCACCGGTG CCACCGCCGC GGCCGCCTGC CGGGTGGCGC GCGAGGTGGG CGCGTCGTAC
GTCGTGGTCG CCGCGCCGGT CGTCGCGCCC GGCATCGACG CCCGCGACCT GGACGCCGAC
GAGATCGTGT ACGTCGAGAT GCCCGCCCGG TTCACCAGCG TGGCGGCCCA CTACCAGGAC
TTCCGGCCGA CCACCGACGA GCAGGTCGTC CGGCTCCTCG ACGGCGGCCG CGGGGACGGC
GTCGACCCGA GCGGCCAGAC GGTGCGGATC CCCGCCGGCG GCGCGATCCT CGCGGGCACC
CTGCGGATCC CGGACCACCC GCGAGGGGTC GTGCTGTTCG CCCACGGCAG CGGCTCCAGC
CGGCACAGCC TGCGCAACGT CAAGGTCGCG CGGCGGCTGA CGAACGCCGG CTTCGCCACC
CTGCTGCTGG ACCTGCTGAG CCCGGCCGAG GAGTCGTCGT GCGACCGCGT CTTCGACGTG
GACGGCCTGG CGCACCGGCT GATCACGGCC ACCAACTGGC TGGCCGGCGT CCCGGCGCTC
GAGGGCCTGC CGATCGGCTA CTTCGGCGCG AGCACGGGCG CCGCGGCGGC GCTGCGCGCG
GCCGCCGCCC TGGACGGCCG GATCACCGCC GTCGTCGCCC GCGGTGGCCG CCCCGACCTG
GCCGGCGACG CGCTGGGCCG GGTCGCTGCA CCGACCCTGC TGGTGGTCGG CGGCGCCGAC
CCCACGGTGC TCGAGCTCAA CCGCTGGGCG GCGGCCCGGA TGCACTGCCC GAGCCAGGTC
ACCATCGTCC CCGGCGCCAC CCACCTGTTC TCCGAGCCGC ACTCGCTGGA GCGGGTGGCC
GAGCTCGCGA CCGAGTGGTT CAGCCGGCAC CTCACCACCC AGGCGGCGGC CGGCACCGTC
AGCCTCGGCG TCTCCTGCTG A
|
|---|
| Protein sequence | MFLDRIDGGR RLAALLSHFT GTNVVVVGLP RGGVPVAAEV AYQLRAPLDV IVVRKPGLPG
EPELTDPERA ALRERATQLR SGRSGLDLSG RVALIVDDGI ATGATAAAAC RVAREVGASY
VVVAAPVVAP GIDARDLDAD EIVYVEMPAR FTSVAAHYQD FRPTTDEQVV RLLDGGRGDG
VDPSGQTVRI PAGGAILAGT LRIPDHPRGV VLFAHGSGSS RHSLRNVKVA RRLTNAGFAT
LLLDLLSPAE ESSCDRVFDV DGLAHRLITA TNWLAGVPAL EGLPIGYFGA STGAAAALRA
AAALDGRITA VVARGGRPDL AGDALGRVAA PTLLVVGGAD PTVLELNRWA AARMHCPSQV
TIVPGATHLF SEPHSLERVA ELATEWFSRH LTTQAAAGTV SLGVSC
|
|---|
| |