| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1853 |
|---|
| Symbol | |
|---|
| ID | 4597173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 1976994 |
|---|
| End bp | 1978820 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639776452 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_923051 |
|---|
| Protein GI | 119716086 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.771828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTCC TGCAGGACAA GCTGCTGCCC ACTCTGGACT ACCTGCTGCA CGAGTGGCTG
GACCTGGGCG AGTTGCTCGA GCGACCCCGC TTCGCCGACC ACGACCGGGG CGGCATCGAC
GACCTCCTCC GGGCGGCGGC CGACATCGCC GCCGAGAAGT ACGAGCCGGC CAACCGGATC
ATCGACGACC ACGAGCCCGT CTTCGACGAC GGCCGGGTCG TGCTGCCGAA GGAGACCGCC
GAGGCGTGGA ACGCCTTCGT CGAGTTCGGC TTCCTGCAGG CCACGCACGA CGTCGAGCAC
GGCGGCATGC AGCTGCCGCG GACCGCGGAC TTCGCCGCCA AGGTGATCTT CGGTGCCGCC
TCGATCGGGA TCAGCCCGGC CGTCCTCACC GAGGCGAACG CGGCGCTGCT GCTCACGTAC
GGCAACCGGC TCCAGCGCGA GCTGTTCGCC GCCCGGGAGC TCACCGGGCG GTGGACGGGG
ACCATGTGCC TGTCCGAGTC CCAGGCCGGT TCCTCGCTCT CGGACATCAC CACGCGCGCG
GTCCCGGAGC CGGACGGCGC CGACGACCCG CTCGGACCGC GCTACCGGCT GACCGGAAAC
AAGATGTGGA TCAGCGCCGG TGAGCACGAC CTGGCCGAGA ACATCGTGCA CCTGGTGCTT
GCGAAGACCC CTGGGCCGGA CGGTGCCATC GACCCGAGCA CTAAGGGCAT CTCGCTGTTC
GTGGTCCCGA AGTTCCTGGT GGACACGGCC GGTGCCCTGC TCGAGCGCAA CGACGTCGTG
CTCGTCGGGC TCAACCACAA GCTGGGCTAC CGCGGCACGC CCAACACCGC CCTCGCCTTC
GGTGATGGCA CCTGGGAACC GCAGGGCGGG AAGGGCGCGG TCGGCTACCT GGTAGGCGAA
CCCGGGCAGG GCCTGAGGCA GATGTTCCAC ATGATGAACG CCGCCCGGAT CGAGATCGGC
CTCGGTGCGG CAGCGCTCGG GTTCGCCGGC TACGCGGCCT CACTGGACTA CGCGAAGAGC
CGTCGGCAGG GTCGGCCGCT CACCCGGTCC GGCAAGGATG CGACGCAGCC GCAGGTGCCG
CTGGTCGAGC ACGCGGACGT GAAGCGGATG CTGCTAGCGC AGAAGGCGTA CGCCGAGGGC
GGCATCGCCC TGGGCCTGTA CGCCGCCCGC CTCCTCGACG AGCAGGCCAC CGGCACGCCG
GAGCAGGTCG CGGAGGCCGG CCGGCTCCTG GAGATCCTCA CGCCGGTGGT GAAGAGCTGG
CCCAGCGAGT GGTGCCTGGA GGCGAACAGC CTGGCGATCC AGGTGCTCGG CGGCTCCGGC
TACACCCGGG ACTTCCCGGT CGAGCAGTAC TGGCGCGACA ACCGGCTCAA CATGATCCAC
GAGGGCACCC ACGGCATCCA GGCCCTCGAC CTGCTCGGGC GGAAGATCCG GCTCGAGGGA
GGCGCCTACC TGGCGGCCCA GGGGGAGCGG GTGGCCGCGA CCGTGACGAA GGCGCACACC
GCCGGGTTCG AGGCGGAGTC GGTCGCGCTC GCGCACGCTT GGCGCCGCGT CGTCGACGTC
GCCGCGGAGG CCTGGTCGAC CGGGGACCCC GAGGACGCGC TGGCCAACGC GACGCCGTAC
CTCCAGGGGT TCGGGCACGT CGTGCTGGCC TGGGTGTGGC TCGACGTCGC GGCGGCGGCG
GCGAGCTGCA GCCACCCGGA GGCAGCCGGG AAGGTCGCCG CGATGCGGTA CTTCTACGGC
TACGAGCTGC CCAAGGTGGG GGCCTGGTTC GACGTCGCCG CGCGGCGCGA TCCTCTCTGC
CGGGACCTTG ATCCTGCCCT GCTCTGA
|
|---|
| Protein sequence | MSVLQDKLLP TLDYLLHEWL DLGELLERPR FADHDRGGID DLLRAAADIA AEKYEPANRI
IDDHEPVFDD GRVVLPKETA EAWNAFVEFG FLQATHDVEH GGMQLPRTAD FAAKVIFGAA
SIGISPAVLT EANAALLLTY GNRLQRELFA ARELTGRWTG TMCLSESQAG SSLSDITTRA
VPEPDGADDP LGPRYRLTGN KMWISAGEHD LAENIVHLVL AKTPGPDGAI DPSTKGISLF
VVPKFLVDTA GALLERNDVV LVGLNHKLGY RGTPNTALAF GDGTWEPQGG KGAVGYLVGE
PGQGLRQMFH MMNAARIEIG LGAAALGFAG YAASLDYAKS RRQGRPLTRS GKDATQPQVP
LVEHADVKRM LLAQKAYAEG GIALGLYAAR LLDEQATGTP EQVAEAGRLL EILTPVVKSW
PSEWCLEANS LAIQVLGGSG YTRDFPVEQY WRDNRLNMIH EGTHGIQALD LLGRKIRLEG
GAYLAAQGER VAATVTKAHT AGFEAESVAL AHAWRRVVDV AAEAWSTGDP EDALANATPY
LQGFGHVVLA WVWLDVAAAA ASCSHPEAAG KVAAMRYFYG YELPKVGAWF DVAARRDPLC
RDLDPALL
|
|---|
| |