| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1743 |
|---|
| Symbol | |
|---|
| ID | 4598506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 1852621 |
|---|
| End bp | 1854021 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639776343 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_922943 |
|---|
| Protein GI | 119715978 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.13647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACG AAGCCGGCTG GGCGCACGCG CCCGGCGCCC TCCGCGGTCC CGCCTGGCTG
CAGGCGCCCG CAGATCCGGA CGCCCTGGTC TCGCACCTGT GGTCGTCGAC CGCGCACAAG
GTCGACGGCG TCCTGCACGT CGGCGGCCTG TCGGTCCCCG ACGTCGTCGC GAACGTCAAC
ACCCCGGCCT ACGTCCTCGA CGAAGCCGAC TTCCGGATGC GTGCGCGGGC GTTCCGCGAC
GCATTCGCGG CGTACGACGT CTTCTACGCC GGCAAGGCGT TCCTCTGCAC CACGGTCGCG
CGCTGGGTGC AGGAGGAGGG GCTGTGCCTC GACGTGTGCT CGAACGGCGA GCTCACCGTG
GCGCTGCGGG CCGGCTTCGA TCCGGCCCGG ATCGGCTACC ACGGCAACAA CAAGACCGTC
ACCGAGCTGC GCCGCGCGCT CGCGGCCGGA GTCGGGCGGA TCATCGTCGA TTCCTTCGAC
GAGCTGGCCC GGCTCGAGAT GATCACCGCC GACAGCGGCC TGCCCGCCCG CGTGATGATC
CGGGTGACGG CGGGCGTCGA GGCGCACACC CACGAGTACA TCGCCACCGC GCACGAGGAC
CAGAAGTTCG GGTTCTCGAT CACTTCCGGG GACGCGTTCG AGGCGGCCCG CCGGGCCGAG
GCCGCGCCGG GGATCGACCT GCTCGGCCTG CACTCGCACA TCGGCAGCCA GATCTTCGAC
TCCTCCGGGT TCGAGGTCGC GGCCCGCAGG GTGCTGGCCC TGCAGGCGCG GATCTCCCAG
GAGCTGGGGG TCACGCTGCC CGAGATGGAC CTCGGCGGCG GGTTCGGGAT CGCCTACACG
ACGCAGGACG ACCCGGCCGA ACCCGCGCAG CTGGCACCTG CGATGACCAA GATCGTCGAG
CACGAGTGCC GGGCCCTCGG CATCCCCGAG CCGCGCCTGT CGATCGAGCC CGGTCGCGCG
ATCGTCGGTC CGGCGATGTG CACCGTCTAC ACCGTCGGGA CCGTGAAGCC CGTCCAGCTC
GACGGCGGGG CGGTGCGCAC CTACGTCTCC GTCGACGGCG GGATGAGCGA CAACATCCGC
ACCGCCCTGT ACGACGCGGA CTACTCCTGC ACGCTGGCCT CCCGGCCGTC GACGATCGGC
GGCTCCGTGC TCGCCCGGGT CGTCGGCAAG CACTGCGAGG CCGGTGACAT CGTCGTCAAG
GACGAGTTCC TGCCCGCCGA CGTCCGCCCC GGCGACCTGG TGGCCGTCCC CGGCACCGGC
GCCTACTGTC GCTCGATGGC CTCCAACTAC AACCACGCGC TGCGTCCGCC GGTGGTCGCG
GTGCGGGACG GAGTCGCGCG CGTCGTGGTT CGCCGGGAGA CTGAGGACGA CCTGTTGGCA
ACGGACATGG GTGATCAGTG A
|
|---|
| Protein sequence | MSHEAGWAHA PGALRGPAWL QAPADPDALV SHLWSSTAHK VDGVLHVGGL SVPDVVANVN
TPAYVLDEAD FRMRARAFRD AFAAYDVFYA GKAFLCTTVA RWVQEEGLCL DVCSNGELTV
ALRAGFDPAR IGYHGNNKTV TELRRALAAG VGRIIVDSFD ELARLEMITA DSGLPARVMI
RVTAGVEAHT HEYIATAHED QKFGFSITSG DAFEAARRAE AAPGIDLLGL HSHIGSQIFD
SSGFEVAARR VLALQARISQ ELGVTLPEMD LGGGFGIAYT TQDDPAEPAQ LAPAMTKIVE
HECRALGIPE PRLSIEPGRA IVGPAMCTVY TVGTVKPVQL DGGAVRTYVS VDGGMSDNIR
TALYDADYSC TLASRPSTIG GSVLARVVGK HCEAGDIVVK DEFLPADVRP GDLVAVPGTG
AYCRSMASNY NHALRPPVVA VRDGVARVVV RRETEDDLLA TDMGDQ
|
|---|
| |