Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1296 |
Symbol | |
ID | 4598918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 1370039 |
End bp | 1371259 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639775890 |
Product | major facilitator transporter |
Protein accession | YP_922497 |
Protein GI | 119715532 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.753687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCTCGT TCCTCAAGCA GCCCCGCGCC GTCTGGGCCG TCGCCTTCGC CTGCGTCATC GGCTTCATGG GCATCGGGCT GGTCGACCCG ATCCTCAAGG AGATCGCGGC CGACCTCGGC GCGACCGGCA GCCAGGTGTC GCTGCTGTTC AGCAGCTACA TGGCGGTGAT GGGCGTCGCG ATGCTCGTGA CGGGCGTGGT CTCGAGCCGG ATCGGCGCGA AGCGGACCCT GCTCTCGGGG CTGGTGCTCA TCGTCGTGTT CGCCGCACTG GCCGGCTCGT CGGGCTCCGT CGGCGCCGTG ATCGGCTTCC GGGCCGGGTG GGGTCTCGGC AACGCGCTCT TCGTCGCGAC CGCGCTGGCG ACGATCGTGC AGTCGTCGAA GGGCTCGGTC GCGCAGGCCG TCATCCTGTT CGAGGCCGCC CTCGGCCTGG GCATCGCCTC CGGCCCGCTG GTCGGCGGCC TGCTCGGCGA GCAGTCCTGG CGCGCGCCCT TCTACGGCGT GTCCACGCTG ATGACGATCG CGGCGGTCGC GACCGCGCTG ATGCTCCCGG CCACGCCGCC TCAGGGTCGG CGTACGTCGC TCGCCGACCC GTTCCGGGCC CTGCGCCACC CGGCACTGCT GCTGCTCGCG CTGGTCGCGG TCTGCTACAA CCTGGGGTTC TTCACGCTGA TGGCCGCCGG ACCGTTCGCA CTGCCGAGCT ACGGGATCAT GGAGATCGGC TGGACGTTCT TCGGCTGGGG TGTGCTGCTG GCGTTCACCT CCGTGGTCCT CGCGCCGTGG CTGCAGCGGC GCTTCGGCAC GCTGCCCACG CTGACCGCGG TGCTGGCCCT GTTCGCGGCG GTGCTCGCGG TGCTGGCGGT GAACTCCGGG AACGAGACCA CGATCACCGT CGGCATCGTG GTGATCGGCG GGCTCCTCGG CATCAACAAC ACGCTGGTGA CCGAAGCGGT CATGGGCGCG GCCCCGGTCG AGCGGGCGGT CGCCTCGGCG GCGTACTCCT TCGTCCGGTT CACCGGCGGT GCGATCGGTC CGTACGTCGC GATGAAGCTC TTCGAGCGCC ACGGAGCGGC CGCGCCGTTC TGGTTCGGCG CCGCGGCCGT CACCGTCGGG GTCGTGGTCA TCGCCGCCGG CAGCACCACG ATCCGGCGGG CCCTGGTCGG CACGCCCGCG TCCCACTCCG CCGCCGAGGC CGAGGCGGAG CTGCTCGGCG ACCTGGCCTG A
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Protein sequence | MSSFLKQPRA VWAVAFACVI GFMGIGLVDP ILKEIAADLG ATGSQVSLLF SSYMAVMGVA MLVTGVVSSR IGAKRTLLSG LVLIVVFAAL AGSSGSVGAV IGFRAGWGLG NALFVATALA TIVQSSKGSV AQAVILFEAA LGLGIASGPL VGGLLGEQSW RAPFYGVSTL MTIAAVATAL MLPATPPQGR RTSLADPFRA LRHPALLLLA LVAVCYNLGF FTLMAAGPFA LPSYGIMEIG WTFFGWGVLL AFTSVVLAPW LQRRFGTLPT LTAVLALFAA VLAVLAVNSG NETTITVGIV VIGGLLGINN TLVTEAVMGA APVERAVASA AYSFVRFTGG AIGPYVAMKL FERHGAAAPF WFGAAAVTVG VVVIAAGSTT IRRALVGTPA SHSAAEAEAE LLGDLA
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