Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1161 |
Symbol | |
ID | 4599336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 1233072 |
End bp | 1234814 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639775756 |
Product | VanW family protein |
Protein accession | YP_922363 |
Protein GI | 119715398 |
COG category | [V] Defense mechanisms |
COG ID | [COG2720] Uncharacterized vancomycin resistance protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.318688 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATCAGC AGCCGACCGT GCCCGCCCGG GAGAAGGAGG GCGGCAAGGT CGTCCTGCTG ATGCTCGCCG GGCTCGTCCT GCTGGCAGGA GCGGCGTACG GCGCGCTGTA TCTCGCCGCC GGCGACAAGG TGCCGCGGGG CACCACGGTG GCCGGTGTCG ACATCGGCGG CCGGACCCCG GCCGACGCCG AGGAGGTGCT CCGCACCGGG CTCGCCGACC GGGTGGACCG GCCGATCACG GTGGCCGCCG AGGGGGCGCG GAGCACCCTC GACCCGGGCG AGGCGGGCCT CACCGTCGAC TACGCCGCAT CGGTGGCCGA GGCCGGCGGC GGCCGCAGCT GGAGCCCCGG GCGGCTGTGG GACTACTGGA CCGGCGGCGA CGACCTCGAC CCGGTCCTCG ACGTGGACGA CGCGGCCTTC GACGCCGCGC TCGACAAGCT CGGGGAGGAC CTCGGCACCC CGCCGGTCGA GGGCGACGTG AAGTTCCGCG ACGGCAAGGT CGTCGTCACC GACCCGGCCA CCGGCGAGGA GATCCACCCC GAGGCGGCCC GACTCGCGAT CACCACGGCG TACATCGCCG AGGACGCCAC CGACGTCGAG CTCGAGCTGC GCCCGGCCGA CCCCGAGGTG GACGCCGCCG ACCTCCAGGA GGCGCTGGAG GCGTTCGCCA ACCCGGCGAT GTCCGGCCCG GTGACGCTGG TCTTCGGCGA CTCGCCGGTG CGGCTCGACC CGGCCGACTT CGGCAAGGTC CTCGGGATGG GCGCCGAGGA CGGCGAGCTG GTGCCGGACC TGCGGGAGAA GAAGCTCGTC AAGCTGGTCG ACCGCGGGAT CAGCCAGGAC GGTGCGCCGG TTGACGCGAC CGTCGCCCTG GTGGACGGCA AGCCCAAGGT GATCCCCGCC AAGCCCGGCG TCACTTACAA GCCCTCCGAC GTCAGCGACG CCTTCCTCGA GCTGGTCGCC CGCGAGGGCG ACCGCGAGAT GAAGGTCCCC TCGACGGTCG CCGAGCCGGA CTTCACCACC AAGGATGCCC GGGCGCTGAA GATCCGCGAG CAGGTCTCCA CGTTCACGAC GTACTACCCC TACGCGGAGT ACCGCAACAT CAACATCGGA CGCGCCGCCG AGCTGATCGA CGGCACCGTC CTGAAGCCCG GCGACGAGTT CTCGCTCAAC GGCATCGTCG GCGAGCGCAC CCGCGAGAAC GGCTTCACCG AGGGCTTCAT CATCAGCGAC GGCATCTTCA AGGAGGACCT CGGCGGCGGC GTCTCGCAGA TGGCGACCAC GACCTTCAAC GCGATGTTCT TCGCTGGCCT GAAGGACATC GAGCACAAGC CGCACTCGTT CTACATCGAC CGCTACCCCG TGGGCCGCGA GGCGACGGTG GCCTGGGGCG CGGTCGACCT GCGGTTCGAG AACGACACGC CGTACGGCGT GCTCGTGCAC GCGCACGTCA CGCCGGCGAC GTCGTCGTCC CAGGGCGTGG TGACCGTGTC GATGTACTCC ACGAAGTACT GGGACATCTC TACCACCACC TCGGACCGCT ACAACTACCG CCAGCCGGCG ACCCGCACCC TGACCACCCC GGACTGCTAC CCGAACACCG GGTACGCCGG CTTCGACGTG GACGTCACGC GCACCTTCCG CCGCCACGGC GAGGACGCCG TCGACCACAC CGAGAAGTTC CACACCGCCT ACACGCCCTC CGACACGGTG ATCTGCAAGA AGCCCAAGCA GCGAGGTGAC TGA
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Protein sequence | MNQQPTVPAR EKEGGKVVLL MLAGLVLLAG AAYGALYLAA GDKVPRGTTV AGVDIGGRTP ADAEEVLRTG LADRVDRPIT VAAEGARSTL DPGEAGLTVD YAASVAEAGG GRSWSPGRLW DYWTGGDDLD PVLDVDDAAF DAALDKLGED LGTPPVEGDV KFRDGKVVVT DPATGEEIHP EAARLAITTA YIAEDATDVE LELRPADPEV DAADLQEALE AFANPAMSGP VTLVFGDSPV RLDPADFGKV LGMGAEDGEL VPDLREKKLV KLVDRGISQD GAPVDATVAL VDGKPKVIPA KPGVTYKPSD VSDAFLELVA REGDREMKVP STVAEPDFTT KDARALKIRE QVSTFTTYYP YAEYRNINIG RAAELIDGTV LKPGDEFSLN GIVGERTREN GFTEGFIISD GIFKEDLGGG VSQMATTTFN AMFFAGLKDI EHKPHSFYID RYPVGREATV AWGAVDLRFE NDTPYGVLVH AHVTPATSSS QGVVTVSMYS TKYWDISTTT SDRYNYRQPA TRTLTTPDCY PNTGYAGFDV DVTRTFRRHG EDAVDHTEKF HTAYTPSDTV ICKKPKQRGD
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