| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1139 |
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| Symbol | |
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| ID | 4599392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 1208957 |
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| End bp | 1211608 |
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| Gene Length | 2652 bp |
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| Protein Length | 883 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 639775735 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_922342 |
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| Protein GI | 119715377 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00209756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTGAGCG GAGGAGTGCC ATCGGCGCTC TGCCCGCCCA CGGTCCTGGT CGTCACCGAC
GGGTCGAGGG AGGGCAGCAC GGTCGCGGCG AGCGCGAACG CCGTCGCCCG CGACGTCCTC
GTCACCCACG CGCTCACCCT CCCCTCCGCG CTCGTCGCCC TCGACTCCTC CACCTATGAC
TGCGTGCTGG TCGACGTCGG CACCCCCGAC GTCGCCGCCG CCGACCTCGC GGACACCCTG
CGCGGCCACG CCGGTGCGGC CGCCCTGGTG CTGGTCGTCG ACGACGACGC CACGATCCCG
GCGGCCCTCG AGGATCTCGC CGACCTGGTG CTCCAGCAGG CCGACCTGAC CGGCGACTGG
CTGCGGCGGG TCCGGCGGGC CGTCGAGCAC GCCCGAGTCC GGGCCGCCCT GCAGGAGTCC
GAGGCTGCGG TCGCGCGGCT CACCGGCATC GTCGAGTCGG TCGCCGACGC GGTGTTCACC
ACCACGATCG ACGGGCTGGT CACCTCGTGG AACGACGGGG CCGAGGCCCT GTACGGCTTC
CCCGCCGCCG AGATGCTCGG CGCCCCGATC GCCACGCTCC ACCCGCCGGG GTCCGACGAG
CCGCGGCGGA TCCTCACCAT GGTCCGCGCC GGGAAGGCGA TCCAGGGACT GGACACGCTG
CGACGCACCC GTGACGGCCG GATGGCGCAG GTCTCGATCA GCGTCACCGG GCTGCGCGAC
CACCGCGACG GCCTCAGCGG CATGGTCGTG GTCGCCCGCG ACATCAGCGA CCGCCTCGAG
CTCGAGGCCG AGCTGGTCCG CCAGACCATG CACGACGCGC TGACCGGGCT CCCCAACCGC
TCCTTCCTCA CCTACCGGCT CACCCAGGCG ATCGCCGAGG GCCGGCGCCG TGGCCGCCCG
GTCGCCGCCC TGCTGCTGGA CCTCGACCAG TTCCGCGCCG CGAACGACGT GCACGGCCAC
CTCACCGGCG ACCGGGTGCT CACCGAGGTC GCGGACCGGC TGCGGGTCCT GGCCCGCCCC
ACCGACGTGG TCGCGCGGAT CGGCGGCGAC GAGTTCGTCC TGGTCTGCCC CGACACCGAC
GTGGCGGCGG CCGGGCGGCT CGCCGAGCAG GTCATCGAGG CCGTCGGCGC ACCGATCCAG
GTCGAGCACC GGGCGCTGCG GGTCGGCGCC AGCGTCGGGA TCGCGGTCGC CCCTCCCCTG
GACTGCGACG CGGAGGTCCT GCTCAAGCAC GCGGACGCCG CGATGTACGA GGCCAAGAAG
CGCGGCCGCG CCCGCAGCCA GGTCTTCGAC CCGGCACTGG CCCGCCTGGC CGGCGAGCAG
CGGCTGCTGG CCGGCGACCT GCGGGCCGCG CTCGATGACG ACCGGCTCGA GGTGCACTTC
CAGCCCGTGG TCGACCTGAC CAGCGACCGG ATGGTCGGCT TCGAGGCGCT GACCAGGTGG
CACCACCCGA CCCGCGGCGC CGTCCCGCCC GGGACGTTCG TGCCGATCGC CGAGGCCCAC
GGGTTCGTGG CCGACCTCGA CCATTGGGTC CTCGACCGCG CCTGCCGGCA GACCGCCGCC
GCGCTCGCCA CCGGCGAGCT CACCCCCGGC GTGCACGTGG CGGTCAACCT CTCCGCCCGC
TCCCTGGACG AGCCGAACCT GGTGGACACA GTCGGCGAGG TCCTCGACCG CTCCGGGCTG
CCGCCGGCAG CCCTGGTCCT CGAGGCCACC GAGACCGCCC TGCCCCGCGA CCCCGAGGCC
GCCCGCGCGT CCCTCGCCGG GCTCCGCGAC CTGGGCGTCG GGATCTCCCT CGACGACTTC
GGGACCGGCT ACTCCTCGCT CAGCTTCCTG CGCGAGCTGC CCGTGACCGG CGTGAAGATC
GACCGGTCGT TCATCCGCAA CGCGGTCGAG CGGCCCGAGG ACCTGGCGAT CACCGAGGCG
ATCGTGCGGC TCGCCAAGGG CCTGGGCCTC GAGACCATCG CCGAGGGCAT CGAGACCGCC
GAGCAGCGCG AGCTGCTGCG CGACCTCGGC TGCGCCCGCG CCCAGGGGTT CTGGTGGAGC
CCGGCCGTGC CGATGGCCGA GCTGCCGGGC GGCCGCGCCG CCGCCCGGGT GGCGCGGATC
CTGCAGCCCG CCGGCACCGC CGACCCCGCC CCGCCGTTGC GCAGCACCCG GGTGTCGCGC
CGGATCATCG AGCCGTCTGC GCCCACCACC GTGGTCACCA CCTGCTGCCT GCGTGGCGGC
ATCGAGTCCG GGCAGGCCTG GCTGGTCGTC ACCACCGCGG CCCGCCGCGA GGCGTTCGCC
AGCTCGCTCG GCCCGCTGCA CGCCACCGCA CTGGCCCGGG GACAGCTGGT CGAGCTGGAC
GCCTACGAGA CGCTGCGCCG GGTCACCTCG GCCGACGGCC GCCTCGACCA GGCCCGCTAC
GACCACGTCG TCGGCTCCGC ACTGCGCCGC CTCGCCGCGG CCGGCGATCA GGTGGGCGTG
CACGCCGAGC TCGGCCACGT GACCCGGCCG CTGCTCAGCC AGGACGTCTC CACCGACCTG
CGGGCCCGGC TGCACGAGGC CGCCGCCCTG ACCCTGGAGT ACGGCGACCA CCCGGCCGAC
TGCGCCGCCC ACGGCCCGGC CGTCGCCCCC GTCGTGGAGC TGTTCGCCGC GGACGGTTCA
ACCGCCGGCT GA
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| Protein sequence | MLSGGVPSAL CPPTVLVVTD GSREGSTVAA SANAVARDVL VTHALTLPSA LVALDSSTYD
CVLVDVGTPD VAAADLADTL RGHAGAAALV LVVDDDATIP AALEDLADLV LQQADLTGDW
LRRVRRAVEH ARVRAALQES EAAVARLTGI VESVADAVFT TTIDGLVTSW NDGAEALYGF
PAAEMLGAPI ATLHPPGSDE PRRILTMVRA GKAIQGLDTL RRTRDGRMAQ VSISVTGLRD
HRDGLSGMVV VARDISDRLE LEAELVRQTM HDALTGLPNR SFLTYRLTQA IAEGRRRGRP
VAALLLDLDQ FRAANDVHGH LTGDRVLTEV ADRLRVLARP TDVVARIGGD EFVLVCPDTD
VAAAGRLAEQ VIEAVGAPIQ VEHRALRVGA SVGIAVAPPL DCDAEVLLKH ADAAMYEAKK
RGRARSQVFD PALARLAGEQ RLLAGDLRAA LDDDRLEVHF QPVVDLTSDR MVGFEALTRW
HHPTRGAVPP GTFVPIAEAH GFVADLDHWV LDRACRQTAA ALATGELTPG VHVAVNLSAR
SLDEPNLVDT VGEVLDRSGL PPAALVLEAT ETALPRDPEA ARASLAGLRD LGVGISLDDF
GTGYSSLSFL RELPVTGVKI DRSFIRNAVE RPEDLAITEA IVRLAKGLGL ETIAEGIETA
EQRELLRDLG CARAQGFWWS PAVPMAELPG GRAAARVARI LQPAGTADPA PPLRSTRVSR
RIIEPSAPTT VVTTCCLRGG IESGQAWLVV TTAARREAFA SSLGPLHATA LARGQLVELD
AYETLRRVTS ADGRLDQARY DHVVGSALRR LAAAGDQVGV HAELGHVTRP LLSQDVSTDL
RARLHEAAAL TLEYGDHPAD CAAHGPAVAP VVELFAADGS TAG
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