Gene Noca_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_0087 
Symbol 
ID4600060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp98382 
End bp99533 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content75% 
IMG OID639774698 
ProductCdaR family transcriptional regulator 
Protein accessionYP_921320 
Protein GI119714355 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.39788 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGCGC TCGACGACCT GGTCAACGAC CTCGCTGCCG CCATGGGCGC GCCCTGCATC 
CTCGAGGACC CGGGCTTCCG GCTGCTCGCC TTCTCCGACC ACCGCGACGT CGACCCGGTC
CGACAGCGCT CGATCCTCGA GCGACGCTCG ACCGAGGAGG TGAGGGACTG GTTCTACGCG
CACGGCATAG CGGAGTCCGA CCAGCCCCTG CGGACGCCGG CGGAGCCCGG CCTCGGCATC
ATGTCCCGGC TGTGCGTGCC GGTGCGCCAC CTGGGCCGGC TGCAGGGGTT CTTCTGGCTT
CTGGACCCCA GCGGCGACAT CGACGCGACA CGGTGGGCCG AGACACAGCC GTTCGCCGAC
GCGGCCGGGG CCCTGTTGAG CCTCGCCGAA CGGCGCCAGG CCCACCGTGA CGCTCTCTAT
CGCGAGGTCG TCGAGGGCGG CCACCGCGCC TCGCGACCGG CCGCCGTCGA GCTCGCCGCG
GCCGCGGGCC TGCGCATGGA TCAGCCCGTG CGGCTCGCCG TCGTGGAACG TCCCGACCTC
GCCACTCAGC TGCCGAGCCG GCCGAGCCGC AGCGGCCTGC TGTGGGTTCG CGAGGCCGCG
GGCTCCTGCG CGGCGATCCT CCGTGCGGAC CAGGCCCGGA GCCTGCCCAC CGATCTCGCG
GCCGTGCTCG GGGCACTGGG ACTCGCCCGG CGGGTGCCCG AGCTGGACGA CCGGACACTG
GTCGGCATCG GGCCCGCCGT CGCCAGCCTG GACCACCTCG CGGAGGCCCG CTCGGGCGCA
CTGGTGGCGC TGCGGGTGGG ACGGCATCGC AGCGACCCGG TCACGTGCTG GGACGGGCTC
GGCCCCCTCG CGCTCCTCGG CATCGCACGC GACGCCGACC TGGCCCGCTC GCTCGTCGCG
CCCGGCCTGC GCGCCTTCCT CGAGGAGGGT TCCCCCACGC TCGTGGAGAC GGCGCGCGTC
CACCTGCAGG AGGCGGCCAA CGTCGCGCGC ACGGCATCAC GTCTGGGCGT CCACCGCCAG
ACCGTCTACC ACCGGCTCGA GCAGATCGAG GGCGCGGCCG GCATCGACCT GGCGGACGGT
GACGCGCGTC TCCGCCTGCA CCTGGCCCTC GAGATCGCCC CCTTCGTGCT CCCGTCCCGC
CCGGGGCACT GA
 
Protein sequence
MDALDDLVND LAAAMGAPCI LEDPGFRLLA FSDHRDVDPV RQRSILERRS TEEVRDWFYA 
HGIAESDQPL RTPAEPGLGI MSRLCVPVRH LGRLQGFFWL LDPSGDIDAT RWAETQPFAD
AAGALLSLAE RRQAHRDALY REVVEGGHRA SRPAAVELAA AAGLRMDQPV RLAVVERPDL
ATQLPSRPSR SGLLWVREAA GSCAAILRAD QARSLPTDLA AVLGALGLAR RVPELDDRTL
VGIGPAVASL DHLAEARSGA LVALRVGRHR SDPVTCWDGL GPLALLGIAR DADLARSLVA
PGLRAFLEEG SPTLVETARV HLQEAANVAR TASRLGVHRQ TVYHRLEQIE GAAGIDLADG
DARLRLHLAL EIAPFVLPSR PGH