| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1212 |
|---|
| Symbol | |
|---|
| ID | 4600414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1151530 |
|---|
| End bp | 1152204 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639773988 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_920613 |
|---|
| Protein GI | 119720118 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5012] Predicted cobalamin binding protein |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.807396 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACTGCA GGGGTGTCTA CGCGGAGATC TCGAGGAGGC TCGCCGACCT GGACGCCGGG
ACTGTCGAGC GCCTGGTCTC CGAGGCTCTC GAGGCTGGCT GCGACGTCGT GGAGGTCGTC
GAGGAGGGGT TGAGAAAGGG GATGGTGGAG GTCGGCGTTA GGTTTGAGAG AGGCGAGTAC
TTCCTCCCGG AGCTCGTCGA GGCTGGGGAC ATATTCAACT CGGTGATGGA GAAGTACGTG
TTGCCGAGGC TTAAGGGCTC CCGGGCCGGC GTTAGGGGGC GCGTGGTGAT AGGGACGGTG
CGCGGGGATA TACACGATAT CGGCAAGAAC CTCGTCGCCA CTATGCTCAG GGTTAACGGC
TTCGAGGTGG TGGACCTCGG GGTGGACGTG CCGCCCGAGA GGTTCGTGGA GGCGGTCGAG
AAGTACGGGG CGGAGGTTGT CGGTATGAGC GCTCTCCTCA CTACCACGAT GCTGGAGATG
AGGAACGTTA TAGACGCGTT GAAGGCGGCG GGCCTCAGGG ACAAGGTCAA GGTGATAGTG
GGGGGAGCCC CCGTAACCGA GGAGATCGCG AGGGAGATAG GCGCGGACGC CTACGGCAGG
GACGCGGTGG ACGCCGTGGA GAAGTGTGCG AAGCTCGTAG AGGAGCTACG CAGAGCACGC
GCTTCAAGTA TATAA
|
|---|
| Protein sequence | MDCRGVYAEI SRRLADLDAG TVERLVSEAL EAGCDVVEVV EEGLRKGMVE VGVRFERGEY
FLPELVEAGD IFNSVMEKYV LPRLKGSRAG VRGRVVIGTV RGDIHDIGKN LVATMLRVNG
FEVVDLGVDV PPERFVEAVE KYGAEVVGMS ALLTTTMLEM RNVIDALKAA GLRDKVKVIV
GGAPVTEEIA REIGADAYGR DAVDAVEKCA KLVEELRRAR ASSI
|
|---|
| |