| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1179 |
|---|
| Symbol | |
|---|
| ID | 4602045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 1120119 |
|---|
| End bp | 1121018 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639773955 |
|---|
| Product | UbiA prenyltransferase |
|---|
| Protein accession | YP_920580 |
|---|
| Protein GI | 119720085 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1575] 1,4-dihydroxy-2-naphthoate octaprenyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.223672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGTTTTC TGAGGCTCGT GCTGAGAAGC CTGGCTCACG CGCTGGAAGC CGCGCGCGTA
TGGGCAGTAG CGATGTACGC GGTGTACGGC CTGCCGGTGC TGATCCTAGC TTCGAAAAGC
CCCGGCTTCG ACGCGGTCAT GGCTGTCTAC GGGCTTGCAG GCGGGGGCCT CATAGAAGCG
TGGACCCACC TCGTGAACGA CTACTTCGAC TTCGTACACG GGGTAGACTT GCCGGGAGTC
TCGGGGACGA CGGTCTACAG GAAGCACCTG TTGGTGGAGG GGTATCCTCG GGCTAAGCTC
CTCCGGTTGC TCGTAGTCCT CGCCGGGGTC GTACTGTTGA TGGCATTCGT AGCCGCGGCT
GTGGGCCGAC CCTACGCTGT GGCTCTGGCG GCGGCCGGGC TTTTCCTCGG CTACGCGTAC
ACGGGTCCCC CGTTTACCTT CAAGTACCGC GCCTTGGGGC ACGTCAACCT GCTAGCCGGC
TGGTGGCTCG TAAACACGCC GGCACTCTAC TACATGGCTA CGGGGTCTTT CTCCGCGAAG
CCTCTCCTCG TCTCGTTGCC GGGAATACTA CTCGTAATCG CTGTTCTGAT GGGCGACAAC
ATCCGGGACC TGGAGGTCGA CCGGAGGGCC GGGGTAAGGA CGCTTGAGGT TATCCTCGGG
AAAAAGCCCT CGAGGATACT GTTCGCGGTA TACGTGGCCT CGGCTTACGC CGCCCAGCTA
GCCCTATCGC TCTTGCTCGG CGCCGGTATG CTTCTACCGC TCCTCTCGCT ACCTCTCCTG
CCAAGCGCCG TGAAAGCCGT GATGAGCGAC CCTCCGCCGC CGAACACCGA CCCCCTCGTG
GCTAGGCTTA CGCTCACGTT CTGCGCCCTG GAGTCCCTCG CGCTATGGGT GTACGTATGA
|
|---|
| Protein sequence | MGFLRLVLRS LAHALEAARV WAVAMYAVYG LPVLILASKS PGFDAVMAVY GLAGGGLIEA
WTHLVNDYFD FVHGVDLPGV SGTTVYRKHL LVEGYPRAKL LRLLVVLAGV VLLMAFVAAA
VGRPYAVALA AAGLFLGYAY TGPPFTFKYR ALGHVNLLAG WWLVNTPALY YMATGSFSAK
PLLVSLPGIL LVIAVLMGDN IRDLEVDRRA GVRTLEVILG KKPSRILFAV YVASAYAAQL
ALSLLLGAGM LLPLLSLPLL PSAVKAVMSD PPPPNTDPLV ARLTLTFCAL ESLALWVYV
|
|---|
| |