Gene Tpen_0958 details

Gene Information

• Locus tag: Tpen_0958
• ID: 4600762
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 908835
• End bp: 910724
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 639773736
• Product: AAA ATPase
• Protein accession: YP_920361
• Protein GI: 119719866
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1112] Superfamily I DNA and RNA helicases and helicase subunits

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCTTCTC CAGTTAAGGA AGACTTGTGG AGCATGCTCG AAAAGCTTCT CGAGAAGGAG 
CGCGGGTCCT CGGCGACAGA GGCGGAGAGG TTCCCGGCGA GGTTCCTCGG AGGCGAGAAG 
GTCCTGCTCT TCGAGAAGCG CGGAAAGCCC TTCAGCTTCG AGCCGGGAGA CGTCGTGGGC 
GTCGCCGAGG GGGGATTGGT CGAGCCCCTA GGAGTCGTGC TCGACGCGAC CTCGGAGACG 
CTCATAGTCG AGAACGTCTA CCGGAAGAGG CTCCAGCAAC TCCGAGAGGT AGAGCTGGCG 
GACGCGGAGT TAACGCTGGG GTACGACCTC CAGCTGGACC TCTTGAAGCA GGTGCGGGGC 
GGCAAGGCGG AGATCGTCGC GGTGTTCAAC GAGAAGCCCG TGGAGCTCTT CGAGGGAGCC 
CCGCAGAAAC CGCTCGGCAG GGTCGACGCG CGGACCGTGA AGGTATCCCT GGTGAAGCGC 
TCGGCGGGCG GCGGGGAGGC TCGGGAAGAG GTACGCCTAG ACGAGTCGCA GTCGAGAGTG 
GTGAACGCCG CCCTCGAGCT AGAGGAAGGG GAGGTGCTGC TCGTCGTCGG GCCGCCGGGC 
ACGGGGAAGA CAACCACCAT AGCGGGGATC GCGGAGAAGC TGGCGGAGCG CGGCGAGCGG 
GTACTGATCT CCTCCCACAC GAACAGGGCT GTGGACAACG CCGTGGGGAA GCTTCCCATC 
GACTTCACCG TGAGGGTCGG CAGGCCGGAG AAGGTACTAA GGGAGATAGA GCCCTACCTG 
CTAAGCTACA AGGTAAAGAG CGCGCTGGGC GAGAGGTACG CGGACCTCCA AGAAAGGATA 
AACGAGTTGC TGGAAACAAT AAGGATCCAC CGAGGGTACC TCCGCGGAAA GGATAGGTCG 
ACGTTTTCCC TTCTGGAGCG GAGCCTCCGG GAGCACGAGA GGGAGCTGAG GGAGCTCTTG 
GAGGAGCGGA GAAAGCTCAT AGAGGAGGTC CAGAGCGAGG TCCTCGGAGG AGCCAGGGTA 
GTCGGCTCGA CGCTAATAAA GTCCCAGCTC TACCCCCTCC GGGACTACCC GTTCGACACC 
GTGATAATAG ACGAGGCAAG CCAGGTCTCG GTAACCCTAG CACTACTCGC AATGGTCAAG 
GGGAGAAAGT GGATAGTAGT AGGCGACCAC AAGCAACTAC TCCCCATATT CAGGTCCGAG 
GTAGCACGGG AAGAGCTGGA GGACCTGGGA GCGTTCACGA GGCTCATGCG GTTCTACGGG 
GAGAAGGGAG GCTACCCTAG AACCCTCTGG CTGAGGAAAA GCTACAGGAG CCACCCCGAC 
ATAGTGGGCT TCGCCGCCCG CTACGTCTAC GAGGGCAAGA TAAAGCCCGC CGCCAAGCCC 
AAGGAGAAAA CGCTCGCGCT CAGCCCGGGG TACCCCGACT TCCTCGAGCC CCGCAAGCCC 
TTCACGCTAA TACACGTAGA CTCGCAGGAA GAGCGCCGGG GCGGCTCAAG GATCAACGAG 
GCGGAAGCCA GGGTATGCTA CGAGCTCGTA GACGCGCTGA CCAAGCACGG CGTACCACAG 
GAAGAGATAG GAGTAATCAC GCCGTACAGA GCCCAGCGGA GCAGAATAAA GGAGTACCTC 
CAAGGCTTCA ACGTCGAAGT AAACACCGTG GACGCATTTC AGGGGAGAGA GAAAGACGTG 
GTAATATTCT CCCTCACGGC TACACGGGAA GACTCGCTCG CATTCGCCGC AGACGCAAAC 
AGGCTAAACG TAGCCATCAC GAGAGCCAGG AAGAAGCTAC TCTTCGTGGC AAACGCGAAC 
GTAATGGAGC ACGGCATACT GAAGGAGATC CGCGAGTGGG CCAAGAAGAA GAAAGCCATC 
TACGACTGGC GCCTAAAGAA GTGGACATAG 

 

Protein sequence

MASPVKEDLW SMLEKLLEKE RGSSATEAER FPARFLGGEK VLLFEKRGKP FSFEPGDVVG 
VAEGGLVEPL GVVLDATSET LIVENVYRKR LQQLREVELA DAELTLGYDL QLDLLKQVRG 
GKAEIVAVFN EKPVELFEGA PQKPLGRVDA RTVKVSLVKR SAGGGEAREE VRLDESQSRV 
VNAALELEEG EVLLVVGPPG TGKTTTIAGI AEKLAERGER VLISSHTNRA VDNAVGKLPI 
DFTVRVGRPE KVLREIEPYL LSYKVKSALG ERYADLQERI NELLETIRIH RGYLRGKDRS 
TFSLLERSLR EHERELRELL EERRKLIEEV QSEVLGGARV VGSTLIKSQL YPLRDYPFDT 
VIIDEASQVS VTLALLAMVK GRKWIVVGDH KQLLPIFRSE VAREELEDLG AFTRLMRFYG 
EKGGYPRTLW LRKSYRSHPD IVGFAARYVY EGKIKPAAKP KEKTLALSPG YPDFLEPRKP 
FTLIHVDSQE ERRGGSRINE AEARVCYELV DALTKHGVPQ EEIGVITPYR AQRSRIKEYL 
QGFNVEVNTV DAFQGREKDV VIFSLTATRE DSLAFAADAN RLNVAITRAR KKLLFVANAN 
VMEHGILKEI REWAKKKKAI YDWRLKKWT