Gene Tpen_0885 details

Gene Information

• Locus tag: Tpen_0885
• ID: 4600828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 832839
• End bp: 834734
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 639773663
• Product: DNA topoisomerase
• Protein accession: YP_920289
• Protein GI: 119719794
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0843416
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTACA AGGCAGTCAT AGTAGCAGAG AAAAACTCTG TTGCGCGTGC AATAGCCAGC 
TTCCTAGGCG GGAGTAGCGT CCGGAGGTTC CGCGTCGAGA GGGTGCCTGC CTACGAGTTC 
CTCTGGGAGG GAGGAAAGCA CCTATCCATA GGCGTGAGCG GGCACATACT TGACTTCGAC 
TTCCCCGAGG AGTATAACAA GTGGGAGAGC GTCGACCCCC GGGTACTCTT CTTCACGAAC 
CCCGTGCTCG TCACTCGGGA AGGCGCGTAC ATCTACGTCA GAGCCTTGAA GACTCTGGCC 
CGGCAGACGT CGACAGTGAT ACTCGCGCTT GACGCGGACG TCGAGGGCGA GGCGATAGCC 
TTCGAAGTGA TGAGGATAAT GAAGAGCGTG AACCCGGAGC TCGAGTTCCG TAGAGCGTGG 
TTCAGCGCGG TGACTAAAAG CGATATACTG GAGGCTTTCA GGAAGCTGAG GGAGCCGAAC 
GAGAACCTGG CGAACAAGGC TTTTGCTAGG ATGGTTGTAG ACCTCACGAT AGGTGCGAGC 
TTCACGCGTA TACTCACTCT CTCGGCTAGG AGGAACGGCG GGGTAATGCC GAGGGGTAGC 
TTCCTGAGCT ACGGGCCATG CCAGACGCCG GTCCTCTACC TGGTGGTTAA GAGGGAGCTC 
GAAAGGGAGC AGTTCAAGAA GAAGAAGTAC TACGTCTTGA GGGTCAGGTT TAGGAGCCAG 
GAAGGCGTGT TCACGGCCTC CGCCACGTTC GAAGACCAGG AGAAAGCGAA GAGTGCTCTC 
GATAGCGTTA AGAGGACCGG CGTGGGGGTC GTTGTATCAG CGGAGTTCAA CGCGGTAGAG 
GTGGAGCCCC CCGTTCCTCT GAACACGGTG TACCTCGAGA GCAGGGCGAG CCTTTTCTTG 
AACCTCAGGC CCAAGGAAAC TCTCTCGATA GCGGAGAAGC TTTACTCCTT CGGCTACATA 
TCCTACCCGA GAACCGAGAC CACAATCTAC CCGCCGACGC TTAACCTGCG CGGAATAGCG 
TCCATGTTCA CCAGGTGGGA GGACGCCGGC TGGTACGTAG CCAAGGTGCT TGCAAAAGGC 
TTCACGCCGA CGCGGGGACG GGAAGACGAC AAAGCCCACC CGCCCATCTA CCCGACGAGG 
AGCGCGTCCC GCGAGGAGAT AACCAGAAGG TTCGGCGAGA AGGCGTGGAA AGTCTACGAG 
TACGTCGTCA GGCACTTCCT AGCAACGATC AGCGAGAACG CAGTAGTCGA GAGGCAGAGG 
GTAGTCGTGA AGGTGGGGGA GCTCTCCCTG CAGTCGGAGG GCCGAAAGCT GGTCTATGCT 
GGTTTCTACA ACGTCTACAA GTACTCCGTC CCGAAGGACG AGCCCTTGCC GTACGTCGTG 
GAAGGAGAGG AAGTCGAAGT CGAGGATGCA AAAATCGAGG CGAGAACCAC CCAGCCTCCA 
CCCTACCTCA GCGAGTCTGA GCTACTCGCC CTGATGAAGA AGTACGGCAT TGGTACGGAT 
GCCACAATGC AGGAGCACAT ACACACCAAC ATAGAGAGGA GATACTTCGT AGTTAAGAAC 
AAGCGGTGCA TACCCACGCC TCTAGGCAGG ACTCTCGCCC TGGCGCTCTA CGAGACCGTC 
CCGGAGCTCG TACTACCAGA GGTGCGCGGC AAGATGGAAG CCTCACTCTC GAAGATAGCT 
ACTGGCGAGA GAACCCCCGA GGAAGTCGTA AACGAGATGC GTAGCGAGTT CCTGGAGTAC 
TACGACCGCC TAGTCGAGCG CATAGACTAC GTCTCCAAGA AGATAGTAGA GGGGCTGAAA 
ATGGTCTTCC AGGACGAAAA GCAGCAAGCT CGAGCAGGCT CAGTGGGCGA AGAACGTTCG 
CGCTCCACGC GTACACACCG TAAAGGTAAA AAGTAG 

 

Protein sequence

MSYKAVIVAE KNSVARAIAS FLGGSSVRRF RVERVPAYEF LWEGGKHLSI GVSGHILDFD 
FPEEYNKWES VDPRVLFFTN PVLVTREGAY IYVRALKTLA RQTSTVILAL DADVEGEAIA 
FEVMRIMKSV NPELEFRRAW FSAVTKSDIL EAFRKLREPN ENLANKAFAR MVVDLTIGAS 
FTRILTLSAR RNGGVMPRGS FLSYGPCQTP VLYLVVKREL EREQFKKKKY YVLRVRFRSQ 
EGVFTASATF EDQEKAKSAL DSVKRTGVGV VVSAEFNAVE VEPPVPLNTV YLESRASLFL 
NLRPKETLSI AEKLYSFGYI SYPRTETTIY PPTLNLRGIA SMFTRWEDAG WYVAKVLAKG 
FTPTRGREDD KAHPPIYPTR SASREEITRR FGEKAWKVYE YVVRHFLATI SENAVVERQR 
VVVKVGELSL QSEGRKLVYA GFYNVYKYSV PKDEPLPYVV EGEEVEVEDA KIEARTTQPP 
PYLSESELLA LMKKYGIGTD ATMQEHIHTN IERRYFVVKN KRCIPTPLGR TLALALYETV 
PELVLPEVRG KMEASLSKIA TGERTPEEVV NEMRSEFLEY YDRLVERIDY VSKKIVEGLK 
MVFQDEKQQA RAGSVGEERS RSTRTHRKGK K