Gene Tpen_0750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_0750 
Symbol 
ID4600401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand
Start bp701123 
End bp702928 
Gene Length1806 bp 
Protein Length601 aa 
Translation table11 
GC content62% 
IMG OID639773526 
ProductATP-dependent DNA ligase 
Protein accessionYP_920155 
Protein GI119719660 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR00574] DNA ligase I, ATP-dependent (dnl1) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCGCGG CGGGAGACCT TCCCTACTCG GTCTTAGCGG ATTTCTACGA GAGGATAGAG 
TCCACGTCTA GCCGCCTGGC GATGACAGAC TACCTGGTGG CGCTCTTCAA GAAGACCCCG
CCCGAGGTAA TAGACAAGGT TGTATATCTG ACTCAGGGCC AGCTGAGGCC CGACTACGAG
GGCGTCGAGC TGGGGGTCGC TGAGAAGCTC GCCCTGAGGG CTCTCGCTAA GGCTTCGGGC
AGGCACCTGA AGGACGTGGA GGATCTATAC AAGAAGACGG GCGACATAGG AGCGGTGGCC
GAGAAGCTTC TCACCGCCCC GGGCGGCGGG CTTCTGGAGT TCTTCGGGAC CCCTGTCCAG
AAGAAGGAGC TGACGGTCTC TCAGGTGTAC AGCGCGCTCA TGAAGATAGC CCAGGCGTCC
GGTGAGGGCG CCCAGGAGAC CAAGGTCAAC ACGCTCGTAG CCTTGCTTCA GGACGCTAAG
CCGAAGGAAG CCCGCTACAT CCTGAGGACT GTGCTTGGGA GGCTCCGCCT CGGCATAGCC
GACATGACGA TACTCGACGC GCTCGCAGCG GCTTTCGCGG GCTCTAAGGC TGCGAGGGAC
GTAATCGAGA GGGCTTACAC GAAGCACCCG GACCTCGGCT ACATCGCGAA GTTGCTGGCC
ACGAAGGGCC TCGACGCCGT GGCGTCGCTG AAGATAGAGG TGGGGATCCC GGTTCTCCCA
ATGCTGGCCG AGAGGCTGAG CGACCCCGCG GAGATACTCG AGAAGCTGGG CGGGAAGTGC
CTCGCGGAGT ACAAGTACGA CGGGGAGAGG GTTCAGGCTC ACAAGAGCGG GGACAAGGTC
CTGCTGTTCA GCAGGAGGCT GGAGAACATC ACCCACCACT ACCCGGACGT CGTGGAGTAC
GTGAAGAGGC TGAAGGTGCG CGAGGCGATA GTGGAGGGGG AGATAGTCGC CTACAACCCG
GACACCGGAG AGATGCTCCC ATTCCAGGAG CTCATGCACA GGAGGCGTAA GTACGACGTG
GAGAAAGCGA TGAAGGAGTA CCCGGTGAGG GTCTACCTCT TCGACGTGAT ATACATGGAC
GGCGAGGAGC TGATCGAGAA GCCGCTGGAC CAGAGGAGGC TCATCCTCGA GAAGATAGTC
CCGGAGGGCG ACGAGGACAT CCTGCTGAGC ACGGCGAAGG TCGTCGGCGA CGCGAAGGAC
CTGCTACACT TCTTCGAGCA GGCGATAAGC GAGGGCTGCG AGGGGGTTAT GTGCAAGTCG
ATAGGCCCCG GCAGCATATA CCAGATGGGC GCCAGGGGCT GGCTGTGGAT AAAGTTCAAG
AGGGACTACA GGATGGAGAT GACCGACACC GTCGACCTCG TCGTGGTGGG CGGCTTCCAC
GGCAGGGGCA AGCGTGCGGG CACATACGGC GCGCTCCTCA TGGCCGCCTA TGACCCGGAG
ACGGATACCT TCAAGACCGT CTGCAAGGTA GGCACCGGCT TCACGGACGA GGATCTCGCG
AAGCTCCCGG AGCTCCTCGA CCCCTACAAG ATACCGCACA GGCACCCCAG GGTTTTCTCC
AAGATAGAGG CGGACGTCTG GTTCGTGCCG GCGGTCGTGC TCGAAATCAT AGGCGCCGAG
ATCACGCTCA GCCCGCTCCA CACGTGTGCT CTCAACAAGC TGGAGGAGGG CGCGGGGCTG
GCTATACGCT TCCCGAGGTT CACTGGGAGG TATAGGTTCG ACAAGAAGCC GGAGCAGGCA
ACCACTGAGA GCGAGCTCAT CGAGATGTAC AAGTCTCAGA AGAAGACCGC CCTGCAGCAG
TCCTAA
 
Protein sequence
MGAAGDLPYS VLADFYERIE STSSRLAMTD YLVALFKKTP PEVIDKVVYL TQGQLRPDYE 
GVELGVAEKL ALRALAKASG RHLKDVEDLY KKTGDIGAVA EKLLTAPGGG LLEFFGTPVQ
KKELTVSQVY SALMKIAQAS GEGAQETKVN TLVALLQDAK PKEARYILRT VLGRLRLGIA
DMTILDALAA AFAGSKAARD VIERAYTKHP DLGYIAKLLA TKGLDAVASL KIEVGIPVLP
MLAERLSDPA EILEKLGGKC LAEYKYDGER VQAHKSGDKV LLFSRRLENI THHYPDVVEY
VKRLKVREAI VEGEIVAYNP DTGEMLPFQE LMHRRRKYDV EKAMKEYPVR VYLFDVIYMD
GEELIEKPLD QRRLILEKIV PEGDEDILLS TAKVVGDAKD LLHFFEQAIS EGCEGVMCKS
IGPGSIYQMG ARGWLWIKFK RDYRMEMTDT VDLVVVGGFH GRGKRAGTYG ALLMAAYDPE
TDTFKTVCKV GTGFTDEDLA KLPELLDPYK IPHRHPRVFS KIEADVWFVP AVVLEIIGAE
ITLSPLHTCA LNKLEEGAGL AIRFPRFTGR YRFDKKPEQA TTESELIEMY KSQKKTALQQ
S