Gene Tpen_0392 details

Gene Information

• Locus tag: Tpen_0392
• ID: 4600527
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 354473
• End bp: 355087
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 639773153
• Product: proteasome endopeptidase complex
• Protein accession: YP_919804
• Protein GI: 119719309
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0638] 20S proteasome, alpha and beta subunits
• TIGRFAM ID: [TIGR03634] proteasome endopeptidase complex, archaeal, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGTAC TTCCGGGCAC TACTGTTGGA ATAAGGGTTA GCGACGGCGT AGTGCTGGCT 
GCCGAGAAGA GAGTTTCCTA CGGACTCTAC CTGATGAGTA AGAGCGGTAA GAAGGTGTAC 
AGGATACTAG ACAAGATGGG GATGGCGAGT GCAGGCCTTA TGGCGGACAT GCAAACTTTG 
GCTAGAATTG TCGAGGCGGA GATGCGTCTG TACGAGCTCG ACTCGAATAT CTCCCCGAAA 
GTCTGGACCG TTGCGAAGCT GCTTTCCTAC ATACTCTACG AGAGGAGACT CTTCCCATAC 
TACGCGGAGA TAGTTGTCGG AGGGCTAGAC GAGGAGGGGT CACACCTCTA CTCCCTAGAT 
CCGATAGGCG CGATAATTGA AGATGACTAC GTAGCCCTGG GATCTGGCAC CCAGCTCGCA 
ATCAGCATAG TGGAGAGCAA CTACAAAAAA GATATGTCGC TAGACGAAGC CCTAAGCCTC 
GCACTTAAGT CCGTATACGC CGCCATGAAG CGCGACGCCG CCAGCGGTGA TGGAGTGGAC 
GTGCTGGTTA TAGGAAAAAG CGGAACCCTG GAGAAAACCT ACCCCTTAAG CGAGCTTCAA 
AGCGTAGCCG TATAA 

 

Protein sequence

MEVLPGTTVG IRVSDGVVLA AEKRVSYGLY LMSKSGKKVY RILDKMGMAS AGLMADMQTL 
ARIVEAEMRL YELDSNISPK VWTVAKLLSY ILYERRLFPY YAEIVVGGLD EEGSHLYSLD 
PIGAIIEDDY VALGSGTQLA ISIVESNYKK DMSLDEALSL ALKSVYAAMK RDAASGDGVD 
VLVIGKSGTL EKTYPLSELQ SVAV