| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0369 |
|---|
| Symbol | |
|---|
| ID | 4600769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 336162 |
|---|
| End bp | 336725 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639773130 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_919781 |
|---|
| Protein GI | 119719286 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.863227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAACC TGATACGTAG TTTCGTAGCG GTAAAAGTGT CCTCTCCAAG CGTTCTGCAG
AGGGTTGAAG CCCTGCAGTC TGATTTACGC GACGCTGGTT TAAGCGCGAA GTTTGTTGAG
AAAGAAAACC TCCACATTAC GCTGAGATTC CTCGGAGAAA TCCCTCCGCA CACGCTAGAG
GAAGTTAGAA ACAGATTGGC GAAACTGAGC TACCACAGAT TCAAGATCGT CTTGAAGGGG
GTGGGGGGCT TCCCAAGTCT TGACCGCCCG AGAGTTCTCT GGATAGGTGT AGATGAAGGA
AGCAGAGAGC TATCAGAGCT AGCTGAGCTC GTGAGAACCT CGCTGAAAGG AGTGAAGCTC
CCGGAACCCG ACGAGGAGTT TCACCCCCAT TTAACCATTG CGCGGTTAAA GGGACCTTTA
AGCGCAGGCG CGAGGAGAAT AATCGCCGGA AGCGCGGATA CCGTTTTTGG GGAGCAGGAA
GTAACATCCT TCTCGCTCTA CAAAAGCACT TTAACGCCGC GCGGGCCGAT TTATGACGAG
ATCGCCAGAT ATGACTTGCC GTGA
|
|---|
| Protein sequence | MTNLIRSFVA VKVSSPSVLQ RVEALQSDLR DAGLSAKFVE KENLHITLRF LGEIPPHTLE
EVRNRLAKLS YHRFKIVLKG VGGFPSLDRP RVLWIGVDEG SRELSELAEL VRTSLKGVKL
PEPDEEFHPH LTIARLKGPL SAGARRIIAG SADTVFGEQE VTSFSLYKST LTPRGPIYDE
IARYDLP
|
|---|
| |