| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0230 |
|---|
| Symbol | rpl3p |
|---|
| ID | 4601220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 206534 |
|---|
| End bp | 207538 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639772984 |
|---|
| Product | 50S ribosomal protein L3P |
|---|
| Protein accession | YP_919643 |
|---|
| Protein GI | 119719148 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03626] archaeal ribosomal protein L3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAAAG GTCATAGGCC TCGACGCGGA TCGAGGGCGT ACTACCCGCG TAAAAGAGCG
AGAAGCATCG TAGCTCGCGT TAGGAGGTGG CCGCAGAACA GGGAGGGCTT CCTCGGCTTC
GCTGGGTACA AGGTGGGGAT GCTTCACGTA ATAGGGGTGG AAATGAACAA GAATAGTCCG
TTCTACGGCC AGGAGAGGTT CTACGCGGCG ACTGTCATCG AGGTTCCACC GTTGAAGGTC
GTCGCTGTAA GGGTTTACGA GAAGACCCCC TACGGGAAGA AGACCCTTTG CGAGGTATGG
GCGAAGGATC TACCCAAGGA CCTGGAAAGG GTGTTCCCGC TACCCAAGGA TCAAAGCTAC
CATGAAGAGC AGTTGAAGAA GCTCGAAGAG GTTAAAAGCC GGGTATCCGA GGTTAGAGTG
CTAGCGGCGA CTCAGCCGAG GCTTTCAGGC CTAGGTAAAA AGAAGCCGGA GCTGATTGAG
ATAGCTGTGG GCGGTCCGCC CGAAAAAGCC TTGAGCCTCG CGCTCGAAAA GCTCGGCAAG
GATCTAACTA TAAGCGATGT ATTCAAGGAG GGGGACTACA TAGATGTTAT CGCCGTAACG
AAGGGTAAGG GCTTTCAGGG CTCGGTTAAA AGGTTCGGAG TTGAAGAAAT GCCCAGGTGG
CACAAGCACA GGAAGGGTCA CAGCAGGATT GGAAGCGTTG GCCCGCAGAA GCCCGCCATA
ATGTTCTATA CGCCGTTCCC AGGACAGCTC GGTTTTCACC AGAGGACGGA GTACAACAAG
AGGATATTGA AAGTCGGGGA TGCGGAGTCT CTCAAAGAGA TAAACCCGCC CGGCGGGTGG
CCGCACTACG GGCTAGTGAG AAGCCAGTTT ATAATAGTTG AAGGCAGCGT TCCTGGCGCG
GTGAAGCGGC TTGTAAGGTT GCGCCACGCC ATCAGGGCTC TCAGAGTTCT CCCGCCGCCA
CAGATAACCT ATATAAGCAC GGCTCCCTGG CCTCCGGCGA GGTGA
|
|---|
| Protein sequence | MAKGHRPRRG SRAYYPRKRA RSIVARVRRW PQNREGFLGF AGYKVGMLHV IGVEMNKNSP
FYGQERFYAA TVIEVPPLKV VAVRVYEKTP YGKKTLCEVW AKDLPKDLER VFPLPKDQSY
HEEQLKKLEE VKSRVSEVRV LAATQPRLSG LGKKKPELIE IAVGGPPEKA LSLALEKLGK
DLTISDVFKE GDYIDVIAVT KGKGFQGSVK RFGVEEMPRW HKHRKGHSRI GSVGPQKPAI
MFYTPFPGQL GFHQRTEYNK RILKVGDAES LKEINPPGGW PHYGLVRSQF IIVEGSVPGA
VKRLVRLRHA IRALRVLPPP QITYISTAPW PPAR
|
|---|
| |