| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4769 |
|---|
| Symbol | |
|---|
| ID | 4595371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008697 |
|---|
| Strand | - |
|---|
| Start bp | 70553 |
|---|
| End bp | 73252 |
|---|
| Gene Length | 2700 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639772558 |
|---|
| Product | ATPase |
|---|
| Protein accession | YP_919218 |
|---|
| Protein GI | 119714076 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1401] GTPase subunit of restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.361924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAAC AGCCCGCCGC AACTGCTGTC ACGCCCGACG CCGATCCGGT GCAGGATCCC
GACTGGCCGA AGCGATGCCG CACCCGCCTG CGCGCCGCCC TCGAGGTGCT TGGCGAGCAC
CAGGATCCGA TTCAGACCAC CGAGTTGCAG GAGCTCGCTG CCGGCCGTGT GCCTCTCAAC
GACTACGACT CCTCGCTCAC CGCCACCGGC GCGGTGCGGG CGTGGAACAA CTTCGGCTGG
AACCTCACGA CCACCTACGA GCACGCAGGC TGGCTCCACG CCACTTCCGA CGGGGGGTTC
CGACTCACCA GGGAAGGCCG AGGGGCGCTT AGCAGCCACC CCGACCCCAT GGCCCTGTAC
GACGCCGCTG TACAGGGCTA CCAGGCATGG GACGTCGCAC GTAACGAGCC GCTGCCAGAT
TTGCCGGCCA CTCCAGAGAG CGACGTCTTG CACAGCGGCG CCGGGGCCGC CCACAGCATG
CGGGCCTGCA CGCCAGTGCT GAACGCGTGG CGCAGTTTGG ACTCCGCCTT CTCGCCAGGC
TCACCGATCT GGAGCCCCGC CACCACGACC ACGCTGCGCA AATACCTCGA CGGCGCGCCC
CGTCCACTGG CCTCCACCCT GCCAGGGCTC GATGACCTCG GCGCTCGGAC CCTGGCTGCA
GAGGCGCTCG TGCTCCTGGT CGGGCCGTTC AGCGACATGG TCGGCAGCAC CAAGCGCAGC
CGGGTACGCA ACCCGCTCAT CCCCGCCGTT GATCCACCCG GGCTGCCCTG GCAGTTGTCC
GCGGACCTCG AGCAGGGCTT CGTTCACGGC GGCAAGGCCC TGATCGCGAC ACCCGTCACG
ATGCTCGAGT CGTTCGTTCG GCTGCTCGAC CACTGGTGGT CGCAGCCGCA AGACACCCGA
GACGCCGCCT GGGCCGACCC ATGGGCCTTC CGGGACCTGG TGAGCGGGGT GCCTGACGTC
GACGACCGCG TCGCCTCGCT CATGTGCCTG CTGGCCCACC CGCGCTCCTT CACCACGGTG
CTGCGCGTTA CCGACCGTCA GCGCATCGTC GAGATGTTCG CCGACCGCCT CGAGGCAGCC
ACCGACGACG TCGAGAAGGA CCTGAAGAGC ATCACGCTGG CCCTCCAGGA CGACCAGGGC
GGTAAGCCGG TGCGCTACGA CACCGCACCA TTGCTGCAGC AGTGGAGCCA GGAGGTCGAG
GGCGGAGGGC GGGCCTGGCT GGTGCGCGGT GAGCTCGACC AGCAGAACCG TGTACCGGCC
TGGGTCAGCC AAGGCCGCGT CACCCTCACC GTGGGGCGGC TCACACAGCT TCCCGCCCAG
TTCACGCAGG ACGCGCTGAG CAGCCTCGTG GAGGACCGCT ACTCAGACCT GCAGGTGGTC
AAGCGCGAGG CCAAGAAGCG CGATGTCCTC GCCTTCGTCC TGGGCATGCA GCCCGGCGAC
CTCATCACGA CCGTCGACGG CGGGACGCTC CGACTTGGAC GCGTCGAGGA CGGGCCTGCG
ACTCTGCAGT CCATCGGTGG GTCCACCCTG ATCGTCAGGC CGGTCGCCTG GTTCACCGAA
AGTTCGCCGA CCGTCAAGGA GCTGCCCGCC GGCGTCCGCA GTCGGGTGCG GTTCAAGGGG
GAGGACGTCC TCGACCTCAC CGAGATCGTC GCTGCCCTCG AGCTCCTCAC CCAGGTTGAT
GAGGAGCTGA CCGGCGACGT CGACATCGAC CAGGTCGAGC TGGACCTCGA GGGCGAGACC
GAGACACCGC CAGGGCAGCT GCCAACCAAG GCGGAACTCG CATGCGACAC CACGAAGCTG
GCCGCGGACC TACACCACGC GGACGCCGGC TGGCTCGACG AGCTCTTGAT CAGTCTCAAC
GAACGCAAGC AGGTCGTCCT GGACGGCCCA CCCGGCACCG GCAAGACCTA TCTCGTCCAG
CATCTGCTCG AGGCATGTGG CGTGGTGGAG GGTCAGTCCG CGCTCGTGCA GTTCCATCCG
ACGTACAGCT ACGAGGATTT CGTGGAGGGC TTCCGCCCCA CTACTGAGGG TGGGGGAGCC
ACGTTGGCCG TCCGGCCGGG TCCGCTGAGG CGGATCGCAG ACGAGGCGCG CAACGCGGAG
GGCAAGCCAT TCGTGCTGGT CATCGACGAG ATCAACCGGG CCAACATCGC GAAGGTCTTC
GGTGAGCTGT ACTTCCTGCT GGAGTATCGG GGCTCCGAGG TTGAGCTCCT TTACAGCGAG
GGGGAGCGGT TCAGCTTGCC GGACAACCTC TTCATCATCG GCACGATGAA CACCGCCGAC
CGCTCTATCG CCCTACTCGA CGCCGCCATG CGCCGCCGAT TCGTGTTCCT GTCCATGGAC
ACCGACGAGC CGGCACTCAG CGGAGTGCTC GCCCGGTGGT GTGCCGACAA CCAACGCCCG
CCAGGCCTCG CCCAGCTGCG GGACCGCCTC AACGCCGAGA TGGTCAAGCG CGGCCTCGAC
AAGTCGCTCG CCTTCGGCCC GTCGTATTTC ATGCGAGACG GGTCCGACAC CCAGGGCGCG
CTTGAGCGGT TGTGGCGCCG CGAGTTGCGC CCCATGTTGG TCGAGCACCA CTACGGCGCC
CACGACAACG TCGACACCTG GTACCCGTTC TCGGCATGGC TCGCGGAGTG CGGCTTGGCA
GCACCGACCC CATCCGCCGA AGCCGCCGAA CCCGCCGAGG ACCACGGTGA CGAGGGCTGA
|
|---|
| Protein sequence | MTQQPAATAV TPDADPVQDP DWPKRCRTRL RAALEVLGEH QDPIQTTELQ ELAAGRVPLN
DYDSSLTATG AVRAWNNFGW NLTTTYEHAG WLHATSDGGF RLTREGRGAL SSHPDPMALY
DAAVQGYQAW DVARNEPLPD LPATPESDVL HSGAGAAHSM RACTPVLNAW RSLDSAFSPG
SPIWSPATTT TLRKYLDGAP RPLASTLPGL DDLGARTLAA EALVLLVGPF SDMVGSTKRS
RVRNPLIPAV DPPGLPWQLS ADLEQGFVHG GKALIATPVT MLESFVRLLD HWWSQPQDTR
DAAWADPWAF RDLVSGVPDV DDRVASLMCL LAHPRSFTTV LRVTDRQRIV EMFADRLEAA
TDDVEKDLKS ITLALQDDQG GKPVRYDTAP LLQQWSQEVE GGGRAWLVRG ELDQQNRVPA
WVSQGRVTLT VGRLTQLPAQ FTQDALSSLV EDRYSDLQVV KREAKKRDVL AFVLGMQPGD
LITTVDGGTL RLGRVEDGPA TLQSIGGSTL IVRPVAWFTE SSPTVKELPA GVRSRVRFKG
EDVLDLTEIV AALELLTQVD EELTGDVDID QVELDLEGET ETPPGQLPTK AELACDTTKL
AADLHHADAG WLDELLISLN ERKQVVLDGP PGTGKTYLVQ HLLEACGVVE GQSALVQFHP
TYSYEDFVEG FRPTTEGGGA TLAVRPGPLR RIADEARNAE GKPFVLVIDE INRANIAKVF
GELYFLLEYR GSEVELLYSE GERFSLPDNL FIIGTMNTAD RSIALLDAAM RRRFVFLSMD
TDEPALSGVL ARWCADNQRP PGLAQLRDRL NAEMVKRGLD KSLAFGPSYF MRDGSDTQGA
LERLWRRELR PMLVEHHYGA HDNVDTWYPF SAWLAECGLA APTPSAEAAE PAEDHGDEG
|
|---|
| |