Gene Pden_5132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_5132 
Symbol 
ID4583693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp649292 
End bp650629 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content71% 
IMG OID639772435 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_918888 
Protein GI119387854 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGCG CTCCCGGACC CTTGCAAAGC CAGATCACGG TATTCTTTGC GGGGAGTTCC 
CAGGCTTGCA TCATTGCCGT CGACGCGCTT CCGCCGGATC GCATCTCCTT GTCTTCAAAT
CCGGGCATCG AATGGACCTC GTGCATGAAC GCGCTCTTGC AGTCCGAGAC TGACCTGCCG
CCGCCGCTGG CGATGCCCGT GCAGGGGCCG GCCCGCCAGG GGCGCCGTGC CCTGCTTGCA
GGGCTGGTGC TGGCTGCCCT GGCGGGGGGC GCGGGCTGGT GGCTCTGGTC CTCGCCGCCT
GCCGTTCACT ACGACACCGC GCCGGTGATC CGCCGCGACC TGGAGAACGC CGTGACTGCC
AGCGGCCGGA TCGAGCCGGG CGCCTATGTC GATGTCGGTG CGCAGGTTTC GGGTCAGTTG
CGCCGGCTGC ATGTGGCCGC CGGAGACCGG GTCGAGGCCG GGCAGTTGCT GGCCGAGATC
GACGCCGAGG TGCAGGCGGC GCAGGTCGAG GGATTGCAGG CCGAACTGGC CCGGCTGGCC
GCCGAGCGCA GCGAATTGCA GGCCCAGCTT GCCTTTGCCG AACGGCAGGC GGGGCGGCAT
TCCTCGCTGG CCGGGCGCGC CAGCAGCCGC GTCACGCTGG AAGAGGCCGA GCGCGACCGC
GACGTGCTGC GCGCGCGGAT CGAGGCGCTC GACGCCACCA TCCGCCGCAG CCGCGCCGCG
CTGCGCGCCG AGGAAGCGAC GCTGGCGCGC TCGCGCATCA CCTCGCCCAT GGCCGGCACC
GTGGTCGCCG TAGAAGCCCG CGAGGGCCAG ACGCTGAATG CCAATTACGA CACCCCGGTG
ATCCTGCGCA TCGCCGACCT CGCCACCATG ACCGTGCGCA GCGACGTCTC CGAGGCCGAC
GTGGTCCATC TGCGGCCCGG AATGCCGGTC TGGTTCACCA CGCTGGGCTT TCCCGACCGC
CGGCATCGCG CGACGCTGCG GCAGGTGTTG CCCGCCCCGC CGGTCAAGGA GGAGGAAGGC
GCCAGTTCGG TCGTCACTTA TGTCGCGCTG TTCGACATTG CCAATGCGGG GGGCGAGTTG
CTTTCGGGCA TGACCGCGCA GGTGTTCTTC GTCACCGAAA GCGCGGCCGA CGTGCTGGCC
GTTCCCGTTT CCGCGCTGGA CGACGACGGC AGCCTGCGCG TCCAGACCCC CGGCGGCGCG
CTGGAAACCC GCCATCCCGC AACCGGGATG CGCACCCGAG CCCATGCCGC GATCCTTTCG
GGATTGGCTG AGGGCGAACA TGTCGTCACC GGCGAGCGCC CCGCCGAAGG CGAGCCGCTG
CTGAGGATCG CGCCGTGA
 
Protein sequence
MRRAPGPLQS QITVFFAGSS QACIIAVDAL PPDRISLSSN PGIEWTSCMN ALLQSETDLP 
PPLAMPVQGP ARQGRRALLA GLVLAALAGG AGWWLWSSPP AVHYDTAPVI RRDLENAVTA
SGRIEPGAYV DVGAQVSGQL RRLHVAAGDR VEAGQLLAEI DAEVQAAQVE GLQAELARLA
AERSELQAQL AFAERQAGRH SSLAGRASSR VTLEEAERDR DVLRARIEAL DATIRRSRAA
LRAEEATLAR SRITSPMAGT VVAVEAREGQ TLNANYDTPV ILRIADLATM TVRSDVSEAD
VVHLRPGMPV WFTTLGFPDR RHRATLRQVL PAPPVKEEEG ASSVVTYVAL FDIANAGGEL
LSGMTAQVFF VTESAADVLA VPVSALDDDG SLRVQTPGGA LETRHPATGM RTRAHAAILS
GLAEGEHVVT GERPAEGEPL LRIAP