| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4942 |
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| Symbol | |
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| ID | 4583503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | + |
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| Start bp | 447413 |
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| End bp | 449116 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639772245 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_918698 |
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| Protein GI | 119387664 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCA TGAGAAAAGG TGCCGAAATC CTTGCCGACG AACTGGCGCT GAACGGCGCG
CGGATCGTCT ATCATGTGCC GGGCGAAAGC TTTCTGGTCG CGCTCGACGC GCTGGCGACA
CGACATCCCG ACATCCGCGC GATCAGCTGC CGCCACGAAA ACGGCGCGGC GCAGATGGCC
GAGGCGCATG GCAAGCTGAC GGGCCAGCCG GGCGTGGCCT TCGTCACCCG CAGCCCCGGC
GCGACCAATG CGGTCAATGG CGTCCACACC GCCTTTCAGG ACGGCTCGCC CATGATCCTG
ATCGTGGGCC AGGTGAAACG CGCGATCCTG GAGCGCGAAG CCTTCATGTC CTACGACTTC
CGCACGATGT TCGCGCCCAT GGCGAAATGG GTGGCGCAGA TCGACGACCC CGCCCGCATT
CCCGAATTCG TCCAGCGCGC CTGGGCCACA GCCCTGTCCG GCCGGCGCGG TCCGGTGGTG
CTGGTCGTGC CCGAGGACGT GCTGGAAGAG ATGAGCGACG TTCCCCCCTC GGCCCGCCCG
GCGCAGCCGT CGCGCGCCGG GGCACCCCGG GACGAGGACA TGGCGCAGAT CTTCGGCATG
CTCGCCCAGG CCCAGCGCCC GCTGGTCGTC GTCGGCGGCT CGGACTGGAG CGAGGCCGCG
CGCGAGGATA TCCAGGACTT CGCCGGCCGG CTGGGCCTGC CGGTGGTGAC GACGTTCCGG
CGCCGCGACA TCATCGACCA CCGCCTGGAT TGCTATGCGG GCGAGATCGG CATCGGCGCC
AATCCCGCGC TGCTTGCCCA TATCAAGGAG GCGGATTTCG TGCTGATGCT CAACGATGCG
TTGAGCGACG TGAACACCAT CGGCGCGGGC TACATGGAGG GGTTCACGCT TTTCTCGATC
CCGCATCCAA AGCAGAAAAT CGTCCATGTC ATGGCCGACC ACGGCGATCT GAACCGGGTG
TTCCAGGTCG ACCTGGCACT GGCGGCCGAC AACGACGCCA CCACCCGCGC CCTGGCCAGC
CGGGATGCCC GCCCCCTGCC GGCACATGCG GAATGGACCG CAAGGCTGCG GGCGACCCTG
CTGGCCGAGC GCGAGCCCCA GCCCTGCCCC GGCGCGATCG ACCTGCCCCG CGTGATGGGC
TGGCTGCGCG AACGCCTGCC CGAAGATGCC ATCGTCACCA ATGGCGTCGG CGCCTATGCC
ACCTGGAGCC AGCGCTATTT CCCGCATTAC CGCCTGCATA CCCAGCTTGG CCCCATCAGC
GGCAGCATGG GCTATTCCCT GCCGGCCGCC ATCGCGGCCA AGCTGGCCCA TCCCGAGCGG
GTCGTGGTGG ATTTCGTCGG GGACGGCTGC TTCCAGATGA GCAGCGAGGA ACTGGCGACG
GCGGTGCAAT ATGGCGCCAA TATCGTCATC CTGCTCTACA ATAACGGGCT TTACGGCACG
ATCCGCATCC ATGAGGAAAA CCGCCTCGAC GGGCGGACCA ACGGCACCGA CCTGACCAAT
CCCGACTTCG TGCTGCTGGC AAAAGCCTAT GGCGCCCATG GCGAACGCGT GACCACGACA
GAGGAGTTCG CCCCGGCCTT CGAACGCGCC CTGGCAGCCG GAAGGCCCGC CCTGATCGAG
ATGGTGATCG ACCCCGAAGC CATCCATTGC CGCTATTCGC TCAGCGATCT TCGTGCCCGG
CGTGCGGCGC GGGCGCAGGG CTGA
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| Protein sequence | MSVMRKGAEI LADELALNGA RIVYHVPGES FLVALDALAT RHPDIRAISC RHENGAAQMA
EAHGKLTGQP GVAFVTRSPG ATNAVNGVHT AFQDGSPMIL IVGQVKRAIL EREAFMSYDF
RTMFAPMAKW VAQIDDPARI PEFVQRAWAT ALSGRRGPVV LVVPEDVLEE MSDVPPSARP
AQPSRAGAPR DEDMAQIFGM LAQAQRPLVV VGGSDWSEAA REDIQDFAGR LGLPVVTTFR
RRDIIDHRLD CYAGEIGIGA NPALLAHIKE ADFVLMLNDA LSDVNTIGAG YMEGFTLFSI
PHPKQKIVHV MADHGDLNRV FQVDLALAAD NDATTRALAS RDARPLPAHA EWTARLRATL
LAEREPQPCP GAIDLPRVMG WLRERLPEDA IVTNGVGAYA TWSQRYFPHY RLHTQLGPIS
GSMGYSLPAA IAAKLAHPER VVVDFVGDGC FQMSSEELAT AVQYGANIVI LLYNNGLYGT
IRIHEENRLD GRTNGTDLTN PDFVLLAKAY GAHGERVTTT EEFAPAFERA LAAGRPALIE
MVIDPEAIHC RYSLSDLRAR RAARAQG
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