| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4875 |
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| Symbol | |
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| ID | 4583436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008688 |
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| Strand | + |
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| Start bp | 378206 |
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| End bp | 379969 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639772178 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_918631 |
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| Protein GI | 119387597 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I
[COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.432532 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCA TCCCCGCCCC GGCCGCGACC CGCAGGCCGA TGAGCCGCAG AAGCAGGCAG
CTTCTGATGG CGGCGCCGAT GGTGCTGCTG CTGGTGACCT TCCTGATCTA CCCTTCGGCG
CAGCTTTTCC TGCTGTCCTT CCAGAAGGGC GGCGGCTTCT CGCTGGAAAA CTACCAGCGC
CTGCTCGGCA CGCCGGTCTA TCTGACGGTG ATGATGCTGA CGCTGAAGAT CTCGGTCGTG
ACCACGATCT TCGCCGTCAT CGCCGGCTAT CCGGTGGCCT ATCTGATCTC GATCCTGCCG
AAGGCGAAAA AGGGCCGGAT CCTGTTCTGG ATCCTGCTGT CCTTCTGGAC CTCGTTCCTG
GTGCGCGCCT TCGCCTGGAT CATCCTGCTG GGCCGCAACG GCGTGGTGAA CAAGCTGTTG
CAGACGCTGG GCATCAGCGA CGCGCCCATC GCGCTGATGT ATAATTTCTC GGCCGTGGTC
ATCGGCATGG TCCATGCCCT GCTGCCGCTG GCGGTGCTGA CCATGCTGTC GGTGATGGAG
AACATCGACC GCAACCTGAC CCGCGCCGCC TCGACCCTGG GCGCCAAGCC CGGCATGGCC
TTCTGGAAGA TCTACTTTCC GCTGTCTTTC CCCGGCGTGA CCTCGGGGGC GCTGATGGTC
TTCGTCACCG CCATCGGCTT CTTCATCTTC CCGGCCCTGC TGGGCGGCCG GCGCGAGACG
ATGATCACCC AGATCATCAT CGAGCAGATC ATCCAGACCA TGAACTGGGG CTTTGCCAGC
GCCGTCGCGG TGCTGCTGCT GGTGGTCGTG CTGCTGGTCT TCGTGCTCTA CGACCGCGCC
GTCGGGCTTT CGACCATGAC CGGCGAATCC TCGGCCAGGA AAGGCCGGCC CGGCCGCAAG
GGGATCTTCT CGCGTATCGG GGACGCGATC CTGACCGGGC TGGGCCATGC CTCGGACGCG
ATCATCGGAC TGTTTCCGCG CCGCCGCGCG CGCGAAGGGG CGCCGCGCCC GCTGGTGGGC
TTCGTCACCG TGCTGCTGGC GGTGATGACG CTGCCGGTGC TGCTGATGAT CCCGCTGTCC
TTTGCGGAAA GCGGGCTGAA CTGGCCGCCG CAGGGCTTTA CCCTGAAATG GTATCAGCAG
ATCTTCAACT CGCCGATCTG GATGAGCGCG CTGACCCGCT CGCTGGTCGT CGGCTTCAGC
ACCGCGGTCC TGGCGCTGCT GATCGGCACG CCCGTCGCCT TCCTGATGGT GCGCGGCAGG
ATGCGGGGCA AGACGGCATT GCTGGCCTTT ACCCTGATGC CGGTGGTGAT GCCGAACATG
ATCCTGTCGG TGGGGCTGTT CTACCTTTAT GCCAAGATCG GGCTGGTCGG CACCAACCTG
GGCCTGATCA TCGGCCACAC GGTCATCGCC GTGCCCTATG TGGTGCTGAC GGTCATGTCG
GTCTTGCGCA ACTACGACAC CCGGCTGGAC CTGGCCGCGC AAAGCCTGGG CGCGACGCCG
ATCCGAACGC TGCGGCTGGT CACGCTGCCG ATCATCGGCG CGGGCATGAT CTCGGCCTTC
CTTTTCGCCT TCACCATCAG CTTCGACGAA TTGACCATCG CGCTTTTCAC CTCGGGCGGC
ATGTCCGCGA CCCTGCCCAA GCAGCTTTGG GACGAGGTAT CGCTGTCGAT CTCGCCGCTG
CTCGCCGCGG TCTCGACCTG CCTGTTCCTG TTCGTGACGG TGCTGATCGT CGCGGTCGGG
CTGCTGAACC GTCGCCAGAA ATAA
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| Protein sequence | MTAIPAPAAT RRPMSRRSRQ LLMAAPMVLL LVTFLIYPSA QLFLLSFQKG GGFSLENYQR
LLGTPVYLTV MMLTLKISVV TTIFAVIAGY PVAYLISILP KAKKGRILFW ILLSFWTSFL
VRAFAWIILL GRNGVVNKLL QTLGISDAPI ALMYNFSAVV IGMVHALLPL AVLTMLSVME
NIDRNLTRAA STLGAKPGMA FWKIYFPLSF PGVTSGALMV FVTAIGFFIF PALLGGRRET
MITQIIIEQI IQTMNWGFAS AVAVLLLVVV LLVFVLYDRA VGLSTMTGES SARKGRPGRK
GIFSRIGDAI LTGLGHASDA IIGLFPRRRA REGAPRPLVG FVTVLLAVMT LPVLLMIPLS
FAESGLNWPP QGFTLKWYQQ IFNSPIWMSA LTRSLVVGFS TAVLALLIGT PVAFLMVRGR
MRGKTALLAF TLMPVVMPNM ILSVGLFYLY AKIGLVGTNL GLIIGHTVIA VPYVVLTVMS
VLRNYDTRLD LAAQSLGATP IRTLRLVTLP IIGAGMISAF LFAFTISFDE LTIALFTSGG
MSATLPKQLW DEVSLSISPL LAAVSTCLFL FVTVLIVAVG LLNRRQK
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