Gene Pden_4822 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4822 
Symbol 
ID4583384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp319580 
End bp320341 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content69% 
IMG OID639772126 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_918579 
Protein GI119387545 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.237012 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.451819 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCG CCATCGTCAC CGGGGGCTGC CGCGGCATCG GCCTGGCCGC CACCGAGATA 
TTCCTGGAAC AGGGCTGGCG CGTCGCCATG GTCGACCGCG ACACCCGGGA ACTGCACCGG
GTCGCGGACG GCATGGAAAA CGTGCTGGCG GTCGAGGCCG ACGTTTCGGA CCCCGACCAG
GTCGAGCGCA TGGTGGCCGA GACCGTCGCC GGCCTCGGCC GCATCGATGC GCTGGTGAAC
AATGCCGGCG TGGCGCTGTT CTCGCATGCC GGGCGCACCA GTTTCGAGGA ATGGCGCGAG
GTGATGGCGA CGAACCTGGA CGGCGTGTTC CTGTGCACCC AGGCCACGGC GCCGGAACTG
GCGAAAACCG GCGGCGCCAT CGTCAACATC GCCTCGATCT CGGGGCTGCG CGCCTCGACC
CTGCGAGTGG CCTATGGCAC CTCGAAGGCG GCGGTGATCC ACCTGACCAA GCAATTCGCC
GCCGAACTGG GCGAACAGGG CATCCGCGTC AATTGCGTCG CCCCCGGCCC GGTCAGGACC
AAGCTGGCCA TGGCGGTGCA TGCGCCCGAG ATCATCTCGG CCTATTACGA CGCCATCCCG
CTGAACCGCT ATGGCGAGGC GCGCGAGATC GCCGAGGCCA TCGTGTTCCT GTGCTCGGAC
AAGGCCAGCT TCGTCTCGGG CCAGACGCTG GCGGTGGATG GAGGCTTCGA CGCCACCGGC
GTCGGCCTGC CGGCGCTGCG GCGCGAGAAC GAGCCGGCCT AG
 
Protein sequence
MKTAIVTGGC RGIGLAATEI FLEQGWRVAM VDRDTRELHR VADGMENVLA VEADVSDPDQ 
VERMVAETVA GLGRIDALVN NAGVALFSHA GRTSFEEWRE VMATNLDGVF LCTQATAPEL
AKTGGAIVNI ASISGLRAST LRVAYGTSKA AVIHLTKQFA AELGEQGIRV NCVAPGPVRT
KLAMAVHAPE IISAYYDAIP LNRYGEAREI AEAIVFLCSD KASFVSGQTL AVDGGFDATG
VGLPALRREN EPA