Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_4381 |
Symbol | |
ID | 4582931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 1572796 |
End bp | 1574571 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639771688 |
Product | TrkA domain-containing protein |
Protein accession | YP_918141 |
Protein GI | 119387086 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.558265 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.124287 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATGC CGCAGATCCT GGCCGTGCTG ATCCTTTGCG CCATGATGGC GATGTTCGTC TGGGGGCGGC TGCGCTACGA CGTGGTGGCG ATGATCGCGC TCTTGGCCTC GCTGGTGGCG GGCACGGTCA AGCCGGACGA GGCGTTTCGC GGCTTCAGCG ACGATATCGT CATCATCGTC GGCAGTGCGC TGGTGGTCAG CGCCGGCATC TCGCGCTCGG GCGTGATCGA GGCGGTGATG CGCCGCGTGC TCCTGCGGTT GCGCAGGCTG CGCTGGCAGC TTCTGGTGCT GGTCGGCTCG GTCACCTTCC TGTCGGCGCT GGTCAAGAAC ATCGGCGCGC TGGCCATGCT GATGCCGGCG GCGCTGAAGA TGGCGCGGCG TTCGAGGCAT TCGCCCTCGG TCTATCTGAT GCCGATGGCC TTCGGCTCGC TCTTGGGCGG GCTGATCACG CTGGTCGGCA CTTCGCCCAA CATCATCGTC TCGCGGGTGC GCGAGCAGAT GACGGGCGAG CCCTTCACCA TGTTCGACTA TGCCCCGGTC GGCATCGGCC TGTCGCTGGT CGGGCTGGTC TTCCTGCAAT TCGCCCATCG CCTGCTGCCC AGGGACCGCC GCGCCACCGC GTCGTTGAGC GAGGCGGTGA ACATCAGCGA CTATCACACC GAGGCCACCG TGCCCGAGGG CGCCGGCATC GTCGGCATGA CGGTGGGCGA TTATCTGGGC GCCGTCGACG GCGAGGTGGC CGTGACCGGC CTCATCCGGG GCGGCGCGCG CCGTGCCGTG ACGCTGCCCG ACACGGTGAT CGAGACGGGC GACACGCTGC TTTTACGCGG CGAGCCGAAT GCGCTGGAGC GCGCGGTGAC CAAGCTGGGA ATGGAGCTGA CCCGGCAGGA TGCGGCGGCC GAAGAGGGAC TGCCCGCCGA CAAGATCGGC GTCATCGAGG CGGTGATCGC GCCCGCCTCG CTGCTGGTGG GGCAAAGCGT GGGGCGGATC GCGCTGTTCG ACCAGCACGG CGTGAACCTG ATCGCCATCT CGCGTGCCGG CCATCGCATG ACGCAGCGGC TCAGCCAGAC GGTGCTGGCG GCGGGCGACG TGCTGCTGGT GCAGGGGCCG ATCGAGCTTT TGCCCGAGCG GATGCGGGTG CTGGGCCTCT TGCCGCTGGC CGAGCGCGAC ATCCGGCTGG GCGGGGTGCG CAAGCAATTG CTGCCGGTGC TGATCCTGGC GGTGGCCATG GCGGCGACGG CGGCGGGGCT GGTGCCGGTC GCCATCGCCT TCTTCGCCGC CGCCGTGCTG ATGATCCTGA CCGGCGCGAT CAGTGCCGAA GAGGCTTATG AGGCCATCGA ATGGCCTATC CTGATCATGC TGGGCGCGCT GATCCCGGTC AGCGAGGCGC TGCAAAAGAC CGGCGTGACC GACCTGTTGG GTGCCTGGCT GTCGCAGGCG GCGATGGGCC TGCCGGCCTG GGGTGCGCTG ACGCTGATCC TGGTCGCGGC CATGGCGGTT ACGCCGTTCC TGAACAATGC CGCGACGGTG CTGGTCATGG CGCCGATCGC GGCGACCTTC GCCAGCCAGC TCGGCTATCG GCCCGATGCC TTCCTGATGG CAGTGGCGGT CGGTGCCGGC TGCGATTTCC TGACCCCCAT CGGGCACCAG TGCAACACGC TGGTCATGGG GCCGGGCGGC TATCGCTTCG GCGACTACGC CCGGCTGGGT GCGCCGCTGT CGGCGCTGGT CGTGCTGACC GGCGTGCCGC TGATCCTGCT GGTCTGGCCG GTGTGA
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Protein sequence | MAMPQILAVL ILCAMMAMFV WGRLRYDVVA MIALLASLVA GTVKPDEAFR GFSDDIVIIV GSALVVSAGI SRSGVIEAVM RRVLLRLRRL RWQLLVLVGS VTFLSALVKN IGALAMLMPA ALKMARRSRH SPSVYLMPMA FGSLLGGLIT LVGTSPNIIV SRVREQMTGE PFTMFDYAPV GIGLSLVGLV FLQFAHRLLP RDRRATASLS EAVNISDYHT EATVPEGAGI VGMTVGDYLG AVDGEVAVTG LIRGGARRAV TLPDTVIETG DTLLLRGEPN ALERAVTKLG MELTRQDAAA EEGLPADKIG VIEAVIAPAS LLVGQSVGRI ALFDQHGVNL IAISRAGHRM TQRLSQTVLA AGDVLLVQGP IELLPERMRV LGLLPLAERD IRLGGVRKQL LPVLILAVAM AATAAGLVPV AIAFFAAAVL MILTGAISAE EAYEAIEWPI LIMLGALIPV SEALQKTGVT DLLGAWLSQA AMGLPAWGAL TLILVAAMAV TPFLNNAATV LVMAPIAATF ASQLGYRPDA FLMAVAVGAG CDFLTPIGHQ CNTLVMGPGG YRFGDYARLG APLSALVVLT GVPLILLVWP V
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