Gene Pden_4298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4298 
Symbol 
ID4582848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1476404 
End bp1477600 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content67% 
IMG OID639771605 
ProductO-succinylhomoserine sulfhydrylase 
Protein accessionYP_918058 
Protein GI119387003 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases 
TIGRFAM ID[TIGR01325] O-succinylhomoserine sulfhydrylase 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.894409 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAGG AGCCGAAGTC CCAGGAGTCG AACCAGCCTC TGCATCCGCG CACGCGTGCC 
GTCCATCACG GCATTCGCCG CAGCCAGTAT GGCGAGATGG CCGAGGCCCT GTTCATGACC
CAGGGCTTTT CCTACGACAG CGCCGAACAG GCCGAGGCCC GTTTCCTCAA GACCGGCCCG
GACGAGTTCA TCTATGCCCG CTACGGCAAC CCGACCTCGC GCATGTTCGA GGACCGCATC
GCCGATCTGG AGGGGACCGA GGACGCCTTT GCCACCGCCA GCGGCATGGC GGCGGTCAAC
GGCGCGCTGA TGTGCCTTGT CAAGCCGGGC GATCACATCG TCTCGTCGCG GGCGCTGTTC
GGCTCCTGCC TCTACGTGCT TGACGTGCTG GCGCGCTTCG GGGTCGAGGT CACTTACGTC
GACGGCACCG ACCTTGGACA ATGGCGCGCG GCGATCCGGC CGGATACCAG GGCCGTGTTC
TTCGAGTCGG TGTCGAACCC GACGCTGGAG GTGGTAGACA TCGCCGGCGT GGCGGAGCTG
GCCCACGCGG TCGGGGCGCT GGTCGTGGTG GACAACGTCT TTGCCACCCC GGTCTATTCC
CGCGCGGTCG AACAGGGCGC CGACGTGGTG GTCTATTCCG CGACCAAGCA TATCGACGGT
TCGGGCCGCT GCCTGGGCGG GGTGATCTGC GGTACGCGCC AGTTCGTGCG CGAGGTGGCC
GAGCCCTATC TGAAACATAC CGGCGGCGCG ATCAGCCCCT TCAACGCCTG GATGATGCTG
GGCGGGCTTG CGACGATGGA GCTACGCGTG CGCGCCCAGA CCGACAGCGC CCTGCAACTG
GCGACCGCGC TGAAGGACGA GCCCAGGCTT GCCCGCGTCA TCTATCCCGG CCTGCCCGAC
CATCCGCAGC ACGACCTGGT GCAGCGCCAG ATGGGCGCGG GCGGCACCAT GGTCGCCATC
GACCTGGGCA GCAAGGAGGC GGCCTTCGCT GCGATGAACC GCATGCGCAT CTTCCAGATC
TCGAACAACC TGGGCGATGC GAAATCCATC GTCACCCATC CCTCGACCAC GACGCATCAG
CGCCTGTCCG AAGAGGTTCG GCTGGACCTC GGCATCACGC CGGGTCTTTT GCGCCTGTCC
ATCGGGCTCG AGGATGCCGG CGACCTGATC GCGGACATCC GCCAGTCGCT GGCCTGA
 
Protein sequence
MSQEPKSQES NQPLHPRTRA VHHGIRRSQY GEMAEALFMT QGFSYDSAEQ AEARFLKTGP 
DEFIYARYGN PTSRMFEDRI ADLEGTEDAF ATASGMAAVN GALMCLVKPG DHIVSSRALF
GSCLYVLDVL ARFGVEVTYV DGTDLGQWRA AIRPDTRAVF FESVSNPTLE VVDIAGVAEL
AHAVGALVVV DNVFATPVYS RAVEQGADVV VYSATKHIDG SGRCLGGVIC GTRQFVREVA
EPYLKHTGGA ISPFNAWMML GGLATMELRV RAQTDSALQL ATALKDEPRL ARVIYPGLPD
HPQHDLVQRQ MGAGGTMVAI DLGSKEAAFA AMNRMRIFQI SNNLGDAKSI VTHPSTTTHQ
RLSEEVRLDL GITPGLLRLS IGLEDAGDLI ADIRQSLA