| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4142 |
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| Symbol | |
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| ID | 4582692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1298113 |
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| End bp | 1299486 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639771449 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_917902 |
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| Protein GI | 119386847 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.101102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAG ACAGCCCCGA AACCGCCCCC AATCCGCAGG CAGACCGCAT CGCCAAGGTG
ATGGCCCGTG CCGGCGTCGC CTCGCGCCGC GAGGCCGAGC GCATGATCCT GGAGGGCCGG
GTGACGGTGA ACGGCAAGAA GATCGACAGC CCGGCGCTGG ACGTCACGCC CGCCGACAGG
ATCCGCGTCG ACGGCAAGCC GCTGGAGGAA CCGCAAGAGA CGCGGTTGTG GCTATATTAC
AAACCCTTGG GCCTGGTGAC CTCGAATTCG GATGAAAAGG GACGGCAGAC CGTCTTTGAC
GCGCTGCCGC GCGACCTGCC GCGGGTGATG ACCGTGGGCC GGCTGGACCT GAACTCCGAG
GGGCTGCTGC TTCTGACCAA TGACGGCGAG TTGAAGCGCC GGCTGGAGCT GCCGACCACC
GGCTGGCTGC GCCGCTATCG CGTGCGGGTG AACGGCCAGC CCAACGACCT GACATTCGCG
CCGCTGCGCC GCGGCGTCAC CATCGACGGC GAGGAATTCG CGCCGATGGA GATCAACCTC
GACAGCCAGC AGGGCGCCAA TGCCTGGCTG ACCGTCGGCA TCCGCGAGGG CAGGAACCGC
GAGATCCGCC GCGCCATGGC CCATGTCGGG CTGATCGTGA ACCGGCTGAT CCGCATCGGC
TATGGCCCGT TCAAGCTGAC CGGCCTCGAG GAGAACGAGG TGCGCGAGGT CAAGCGCAAG
GTGCTGCGCG ACCAGTTGGG CGGGCTCCTG ACCGGCGAGA CCGAGGAAAA GCCGCGCAGT
TTCCGCGAGC GCGGCGCGGC CAAGCCGGCC GAGGGCGATG CCCGTCCGCG CAAGCCGCGC
GACGAGGGCG GCCGCAAGCC CTTTGCGCGC CGCGAGGATG GGGACCGCAA GCCGTTTGCG
CGGCGTGAAG AGGGTGATCG CAAGCCGTTT GCACGCCGCG AGGATGGCGA ACGCAAGCCC
TTCGGCAAGC GCCCGGATGG GGGGCGAAAA CCCTTTGCGA AACGCGAGGA TGGCGAGCGC
AAACCCTTTG CCCGGCGCGA GGATCGCGAT GGCAAGCCTG CTGTCCGCGA CGGTGCGCGC
AAGCCCTTCG GCAAGGGGCC GCGGGACGAA TCGCGCCGCG ATGGCGACCG TCCCGAGCGC
GCCGGCAAGC CGGGCTTCAA AGCCAGGGCG ACCGAAGGCG AGCGCGGCTT CAAGCCCCGC
ACCGAAGGCG GCTTCAAGCC GCGCGGCGAA GGCAAGCCGG CCCGCGATTT CAAGCCCGGC
AGGGCCACGG GCAAGCCGGG CGGCAAACCC GGTCCGAAAC CGGGCTTCGC AAAAACGAAT
CGCGCCCCCG GAAAGGGAGC GCGACCAGAG GGAAAAGGGC CGCGGCGCGG CTAG
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| Protein sequence | MTEDSPETAP NPQADRIAKV MARAGVASRR EAERMILEGR VTVNGKKIDS PALDVTPADR
IRVDGKPLEE PQETRLWLYY KPLGLVTSNS DEKGRQTVFD ALPRDLPRVM TVGRLDLNSE
GLLLLTNDGE LKRRLELPTT GWLRRYRVRV NGQPNDLTFA PLRRGVTIDG EEFAPMEINL
DSQQGANAWL TVGIREGRNR EIRRAMAHVG LIVNRLIRIG YGPFKLTGLE ENEVREVKRK
VLRDQLGGLL TGETEEKPRS FRERGAAKPA EGDARPRKPR DEGGRKPFAR REDGDRKPFA
RREEGDRKPF ARREDGERKP FGKRPDGGRK PFAKREDGER KPFARREDRD GKPAVRDGAR
KPFGKGPRDE SRRDGDRPER AGKPGFKARA TEGERGFKPR TEGGFKPRGE GKPARDFKPG
RATGKPGGKP GPKPGFAKTN RAPGKGARPE GKGPRRG
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