| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3888 |
|---|
| Symbol | |
|---|
| ID | 4582439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 1019578 |
|---|
| End bp | 1020747 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639771197 |
|---|
| Product | Fis family transcriptional regulator |
|---|
| Protein accession | YP_917650 |
|---|
| Protein GI | 119386595 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0700006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.958295 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAA CCTGCCGGAT CACCCGGATC GCGATTCTGG CGCTTGCCTT GTCCCTGTCG
GGATCGGGTC TGGCCGCCAT GGCCGAGACG GCAGGCGCAG TCGAGCAAGC CGAATTGCCC
GTGGTGACGC TGGCCGATGC CGAGCGCGGC TGGATCGAGG CGCGCGTGCC GGTCTCGGGC
TCTCTGGTCG CCCGGCAGGA GGTGCAGGTC CATGCCCTGG TCTCGGGTCA CGAGATCACC
CGGCTCGAGG CCGAGGTCGG CGACCGCGTC GAGGCCGGCG CGGTGCTGGC GCGGCTGTCC
GAGGATGTGT TGTCGGCGCA ACTGGCTCAG GCCGAGGCCG AATATCAGCG CGCCGAGGCG
GGAATCAGTC AGGCCGAAAG CCAGATCGCC AGCGCCGAGG CCAGCCTGAC GCAGGCGGTG
GCGACGTTGG AGCGCACCCG CAGCCTGCGG CAAAGCGGCA ATGCCAGCCA GGCGGTGCTG
GACCAGGCCA TCGCGGCCGA GGCTTCGGCG CGGGCGGCGG CGGCCTCGGC CTCGGACGGG
CTGGGGGTGG CGCGGGCCGC GCTTGCGCAG GCTGCGGCGG CGCGGCGCAT CGCGCAGCTG
AACCTGGGCC ATGCCAGCGT CACGGCGCCG GTCGACGGCG TGGTCGTGGC GCGGACCGCC
CGGCTGGGTG CCATTCCCGG CAGTGGCGGC GAGCCGCTGT TCACCCTGAT TGCCGGCGGC
GAGGTCGAGC TTGAGGCCGA TGTGATCGAA ACCGCGCTGA GCCAGTTGAA AGCCGGCGAT
GCTGCCGAAA TCCAGGTCGC CGGCCTTGGT CGCGTCCAGG GCAAGCTGCG GCTGGTGCCG
GCCGCCGTCG ACCCGGTCAC GCGGCTTGGC CCGGCGCGAA TCGCGCTGGA CCCCGACCCG
CGCTTGCGTC CGGGGCTTTT CGCCAGCGGA TGGATCATCA CCGACCGCCG TGAGGCGGTG
ACCGTGCCCG CCTCGGCCAT CCTTGCCGAT GCCTCGGGCG AGCGGGTACA GGTGGTCAAG
GACGGCCAGA TCGAGACGCG CGAGGTCCGC GGCGGGCTTG TCTGGCAGGG CCGCCGCGAG
ATCCTCGACG GGCTGGCCCC GGGCGAGACG GTCGTGGCCC GCGCCGGTGC CTTCTTCCGC
AGCGGCGACC AGGTGCGGGC GGCGCCATGA
|
|---|
| Protein sequence | MTATCRITRI AILALALSLS GSGLAAMAET AGAVEQAELP VVTLADAERG WIEARVPVSG
SLVARQEVQV HALVSGHEIT RLEAEVGDRV EAGAVLARLS EDVLSAQLAQ AEAEYQRAEA
GISQAESQIA SAEASLTQAV ATLERTRSLR QSGNASQAVL DQAIAAEASA RAAAASASDG
LGVARAALAQ AAAARRIAQL NLGHASVTAP VDGVVVARTA RLGAIPGSGG EPLFTLIAGG
EVELEADVIE TALSQLKAGD AAEIQVAGLG RVQGKLRLVP AAVDPVTRLG PARIALDPDP
RLRPGLFASG WIITDRREAV TVPASAILAD ASGERVQVVK DGQIETREVR GGLVWQGRRE
ILDGLAPGET VVARAGAFFR SGDQVRAAP
|
|---|
| |