Gene Pden_3880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3880 
Symbol 
ID4582431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1015131 
End bp1015481 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content66% 
IMG OID639771189 
Productchorismate mutase 
Protein accessionYP_917642 
Protein GI119386587 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1605] Chorismate mutase 
TIGRFAM ID[TIGR01795] monofunctional chorismate mutase, alpha proteobacterial type 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.367176 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.891954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACC ACCCATGCCC CGTGCAGCCA GAATTCCAGC CAGCGGAGAC CCCGATGAGT 
GACCCGACCG CCCGCGCCGC GGCCCTGCTC AAGGAGCATC GCGCCAGCAT CGACCGGCTG
GACGCGATCC TGGTCTATAC GCTGGCCGAA CGCTTCAAGC ACACCCAATC CGTCGGCCGC
CTGAAGGCCG AACACGACCT TCCTCCGTCC GATCCCGCCC GCGAGGCGCA GCAGATCGAG
CGGCTGGAAC GCCTCGCGCG CGAGGCCGAT CTGGACCCGG AATTCGCGCG CAAATTCCTG
AACTTCGTGA TCGCCGAAGT GATCCGGCAT CACGAGACCT TCCAATCGTA G
 
Protein sequence
MSDHPCPVQP EFQPAETPMS DPTARAAALL KEHRASIDRL DAILVYTLAE RFKHTQSVGR 
LKAEHDLPPS DPAREAQQIE RLERLAREAD LDPEFARKFL NFVIAEVIRH HETFQS