Gene Pden_3701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3701 
Symbol 
ID4582253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp850505 
End bp851842 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content67% 
IMG OID639771011 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_917464 
Protein GI119386409 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.592545 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACC AAGCCAGCAA ACCCGCCCCG GCGGTGAAGA AGCTCTTCAT CAAGACCTAT 
GGCTGCCAGA TGAACGTCTA TGACAGCCAG CGCATGGCCG AGGCCATGGG CGCCGAGGGC
TATGTCCTGA CCGAGAACCA GTCGGACGCC GACATGGTGC TGCTGAACAC CTGCCATATC
CGGGAAAAAG CGGCCGAGAA GCTTTATTCC GACCTGGGGC GGCTGAAGCC CCTGAAGGCG
GAAAGGCCGG ACCTGAAGAT CGGCGTCGCC GGCTGCGTGG CCCAGGCCGA GGGCGAGGAG
ATCCAGCGCC GCATGCCCAT CGTCGACCTG GTGGTGGGGC CGCAGGCCTA TCACCGGCTG
CCGGCCATGG CGCGCGCGGG CAGGGGCGTC GATACCGAAT TCCCGGCCGA GGACAAGTTC
GAGCATCTGC CGAAGCCCGC CGCCACCAGG CGCGCCCCGG CGGCTTTCCT GACCGTGCAG
GAGGGGTGCG ACAAGTTCTG CGCCTTTTGC GTCGTGCCCT ATACGCGGGG GGCCGAGGTG
TCGCGCCCGG TCTCGCGCAT CCTGGCCGAG GCGCGCGATC TGGTCGCGCG CGGCGTGCGC
GAGATCACGC TTTTGGGCCA GAATGTCAAC GGCTGGCATG GCGAGGGGCC GGAGGGGTCC
GAATGGGGTT TCGGCCGGCT GATCCGGGCG ATCGCGGAAA TCGACGGGCT GGACCGCATC
CGCTATACCA CCAGCCATCC GAACGACATG GCCGACGACC TGATCGCGGC GCATCGCGAT
GAGCCGAAGC TGATGCCCTA TCTGCACCTG CCGGTGCAAT CGGGTTCCGA CCGCATCCTC
AAGGCGATGA ACCGCCGCCA CACGGTCGAC CAATACCTGC GGCTGATCGA GCGTATCCGC
GAGGCGCGGC CCGACATCAT GCTGACCAGC GATTTCATCG TCGGCTTCCC CGGCGAGACC
GACCAGGACC ACCAGGGCAC GCTGGAGCTG GTGCGGGCGG TGAATTTCGG CACCGCCTTC
AGCTTCAAGT ATTCGCCGCG TCCCGGCACC CCGGCCTATG AGCGGCCGGA GATCGAGGGT
GCCGTGGCCG ATGCGCGCCT GCAGGAATTG CAGGCGTTGC TGACCAGCCA GCAGAAGGCG
GCGCAGGAGG GCATGGTCGG GCGCGAGCTG GGCGTGCTGT TCGAGAAGCC CGGCCGCAAT
CCGGGGCAGA TGGTCGGCAA GTCGGACTAT CTGCACGCGG TCTTTGTCGA GGCGCCGGCC
GCCAAGGTCG GCGATCTGGT GCGCGTGCGC ATCACCCATA GCGCGCCGAA CTCGCTGGCC
GGGGTGTTGG CGGCCTGA
 
Protein sequence
MSDQASKPAP AVKKLFIKTY GCQMNVYDSQ RMAEAMGAEG YVLTENQSDA DMVLLNTCHI 
REKAAEKLYS DLGRLKPLKA ERPDLKIGVA GCVAQAEGEE IQRRMPIVDL VVGPQAYHRL
PAMARAGRGV DTEFPAEDKF EHLPKPAATR RAPAAFLTVQ EGCDKFCAFC VVPYTRGAEV
SRPVSRILAE ARDLVARGVR EITLLGQNVN GWHGEGPEGS EWGFGRLIRA IAEIDGLDRI
RYTTSHPNDM ADDLIAAHRD EPKLMPYLHL PVQSGSDRIL KAMNRRHTVD QYLRLIERIR
EARPDIMLTS DFIVGFPGET DQDHQGTLEL VRAVNFGTAF SFKYSPRPGT PAYERPEIEG
AVADARLQEL QALLTSQQKA AQEGMVGREL GVLFEKPGRN PGQMVGKSDY LHAVFVEAPA
AKVGDLVRVR ITHSAPNSLA GVLAA