Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_3554 |
Symbol | |
ID | 4582109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008687 |
Strand | - |
Start bp | 702466 |
End bp | 704322 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639770867 |
Product | hypothetical protein |
Protein accession | YP_917320 |
Protein GI | 119386265 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0367] Asparagine synthase (glutamine-hydrolyzing) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00291608 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.487552 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGCC ATCTTCCCGC CTCCTATTCC TCGCTGCCTG CAGAGGACAT GATCATTGTC TCGGGGCCTG AAACGCACAA GCCGGCCGAG CAGGATATCA TCGTCTTCGG AACGCCGATC CATGAGAATG TCCCGCAGCT CGTAGACCGC TATCTCAGCA ATGATCTGCC CGGTTTCCTG GCCCATCAGG CGCGACATGG AATCGGCAGC TACGTCCTTG CCGATTTCCG GGAGGGGCGC CTGCGCATGA TAACAGGGCC GGGTTATTGC GGCGGCTATG TCCGCAGCAC CTCCGAAGGC ATTGCCGTCA CGACACTCCT GCGCGACGTC ATGCGTTTTT CACCGGGCGA GTTGCGCTTC AACGATTTCT CTCTTTGCTA TTTTCTAAGC AGCGTCCCTG CCAGCACCTT CGGGATGCTG CCTCTCTCCA CCCTGTTCAA GGGGGTGGAC CGGCTTCCTC CCGCCTCCGT TCTTGAAATC TCCGGCGGGA GCGTGACGGT TTGCCGGACC TATCTGAACA TAGCGGAACT CGAACGTCCC GCCTCTTTGG AAGAGGCCGT CCTGGAGGTC GCGGAAAAGT ACGCGGATTA TTACCGGCGC AGCGACCTGC AACCTGCCGT CATGTTCTCG GGCGGGGTGG ACAGCCTGCT GATCCTGCTT GCCATGCAGC AGGTGATGGA TCCAAAGGAT ATCCGGATCT TCACGGTACA GACGATGCGG ACCCATTCAA AGACGAACGG GCACCATCGT GCCTATCCCG TCGCACAAAA TCTGGGCCTG GATATAGAGC TTATCGAAAG CGACTCGTTG CGTTCGGGGG GAGCCGTATC GGCAATCCTT GGCAGGATGC AGCTTGACAT GGCCAATACG CGGGCACCCG ACCTTGCCTT TGCAGACCAC CCCGATATCG GAACGCTCGT CCTGCATGGG CAGAACATGG ACGCGCTGGT CAACAACAAC ATGCTGTCCT TGCAGAGCAA TCTGGAGCTT GGCTACCTTT CGAACGCGAA AGTGTCCGAT CTGACGACGG ATGAGCTGCA TTTGAAGCAG TTGACGGCCC TGACCCGCAA CATGCGATTC ACCGACGCCT ATCTGCAGGA TGCCGAGTTC CAGCGCACGA CGGTCAGGTA TTTCCGCAAG ATGACCCCCA ATACGATCGC CGATCCGCAG GCTGGAACGA CCAGCGGCAT CATGCGCGGC ATGATCGCAA CCCAATATCC CAATCTGCTG AACCAGCCGC AGAAACCATT CTCGATCTTC AGCCAAGTTG CGGAAATGAG CAGCGAGGCG ACGCGGATGA ACGGCTACCT GGGGCAGAAT GCGACGGAAA CGGGACTAGT CGACTTGTTG CGCTTTTATG GATATGGGCA GATCGCAATG AAGCGGGGGT GCAGCGTCCC CCTATCCAGC GGAACCCGTA TCTCCTATGC GCCCATGTCC GGGCCGCTTG TCAGCTATTT CCTCGGTCGA CCTCGCGGAT TGCTGGAGGC CAGCCAGCCG AAGCGAGAAG TCTATGCGCT GGTCACGAAG CTTGCAGGAA AGTCATACAG TGCGATGACG GCATGGAAGG ACGTCAAGGT TCGCGACTGG CTAAAAACAC TGGATGCCCG TCAAAGCAGC GATCTGCGCG ATGTCCTGGT GGAAGCGCGC CGCGACCTTC TCGATCCTGG CAACTCGCGC CTTCTGGGCA TGCTGACATC GAAAAAGACC CGCGCCAATG TCGAGACGGT ATACAAGGCG GCGACTACGG GTTCGGATCC GGCACAGGAA ACCTATTCCG TGTTCAATCA GTCCATTGCC CGCAATCTGC TGAATATTGA ACTGCTTCTC GAAAGCGCGG AGGGAACACG CGTCTGA
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Protein sequence | MSGHLPASYS SLPAEDMIIV SGPETHKPAE QDIIVFGTPI HENVPQLVDR YLSNDLPGFL AHQARHGIGS YVLADFREGR LRMITGPGYC GGYVRSTSEG IAVTTLLRDV MRFSPGELRF NDFSLCYFLS SVPASTFGML PLSTLFKGVD RLPPASVLEI SGGSVTVCRT YLNIAELERP ASLEEAVLEV AEKYADYYRR SDLQPAVMFS GGVDSLLILL AMQQVMDPKD IRIFTVQTMR THSKTNGHHR AYPVAQNLGL DIELIESDSL RSGGAVSAIL GRMQLDMANT RAPDLAFADH PDIGTLVLHG QNMDALVNNN MLSLQSNLEL GYLSNAKVSD LTTDELHLKQ LTALTRNMRF TDAYLQDAEF QRTTVRYFRK MTPNTIADPQ AGTTSGIMRG MIATQYPNLL NQPQKPFSIF SQVAEMSSEA TRMNGYLGQN ATETGLVDLL RFYGYGQIAM KRGCSVPLSS GTRISYAPMS GPLVSYFLGR PRGLLEASQP KREVYALVTK LAGKSYSAMT AWKDVKVRDW LKTLDARQSS DLRDVLVEAR RDLLDPGNSR LLGMLTSKKT RANVETVYKA ATTGSDPAQE TYSVFNQSIA RNLLNIELLL ESAEGTRV
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