Gene Pden_3554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3554 
Symbol 
ID4582109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp702466 
End bp704322 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content58% 
IMG OID639770867 
Producthypothetical protein 
Protein accessionYP_917320 
Protein GI119386265 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0367] Asparagine synthase (glutamine-hydrolyzing) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00291608 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.487552 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGCC ATCTTCCCGC CTCCTATTCC TCGCTGCCTG CAGAGGACAT GATCATTGTC 
TCGGGGCCTG AAACGCACAA GCCGGCCGAG CAGGATATCA TCGTCTTCGG AACGCCGATC
CATGAGAATG TCCCGCAGCT CGTAGACCGC TATCTCAGCA ATGATCTGCC CGGTTTCCTG
GCCCATCAGG CGCGACATGG AATCGGCAGC TACGTCCTTG CCGATTTCCG GGAGGGGCGC
CTGCGCATGA TAACAGGGCC GGGTTATTGC GGCGGCTATG TCCGCAGCAC CTCCGAAGGC
ATTGCCGTCA CGACACTCCT GCGCGACGTC ATGCGTTTTT CACCGGGCGA GTTGCGCTTC
AACGATTTCT CTCTTTGCTA TTTTCTAAGC AGCGTCCCTG CCAGCACCTT CGGGATGCTG
CCTCTCTCCA CCCTGTTCAA GGGGGTGGAC CGGCTTCCTC CCGCCTCCGT TCTTGAAATC
TCCGGCGGGA GCGTGACGGT TTGCCGGACC TATCTGAACA TAGCGGAACT CGAACGTCCC
GCCTCTTTGG AAGAGGCCGT CCTGGAGGTC GCGGAAAAGT ACGCGGATTA TTACCGGCGC
AGCGACCTGC AACCTGCCGT CATGTTCTCG GGCGGGGTGG ACAGCCTGCT GATCCTGCTT
GCCATGCAGC AGGTGATGGA TCCAAAGGAT ATCCGGATCT TCACGGTACA GACGATGCGG
ACCCATTCAA AGACGAACGG GCACCATCGT GCCTATCCCG TCGCACAAAA TCTGGGCCTG
GATATAGAGC TTATCGAAAG CGACTCGTTG CGTTCGGGGG GAGCCGTATC GGCAATCCTT
GGCAGGATGC AGCTTGACAT GGCCAATACG CGGGCACCCG ACCTTGCCTT TGCAGACCAC
CCCGATATCG GAACGCTCGT CCTGCATGGG CAGAACATGG ACGCGCTGGT CAACAACAAC
ATGCTGTCCT TGCAGAGCAA TCTGGAGCTT GGCTACCTTT CGAACGCGAA AGTGTCCGAT
CTGACGACGG ATGAGCTGCA TTTGAAGCAG TTGACGGCCC TGACCCGCAA CATGCGATTC
ACCGACGCCT ATCTGCAGGA TGCCGAGTTC CAGCGCACGA CGGTCAGGTA TTTCCGCAAG
ATGACCCCCA ATACGATCGC CGATCCGCAG GCTGGAACGA CCAGCGGCAT CATGCGCGGC
ATGATCGCAA CCCAATATCC CAATCTGCTG AACCAGCCGC AGAAACCATT CTCGATCTTC
AGCCAAGTTG CGGAAATGAG CAGCGAGGCG ACGCGGATGA ACGGCTACCT GGGGCAGAAT
GCGACGGAAA CGGGACTAGT CGACTTGTTG CGCTTTTATG GATATGGGCA GATCGCAATG
AAGCGGGGGT GCAGCGTCCC CCTATCCAGC GGAACCCGTA TCTCCTATGC GCCCATGTCC
GGGCCGCTTG TCAGCTATTT CCTCGGTCGA CCTCGCGGAT TGCTGGAGGC CAGCCAGCCG
AAGCGAGAAG TCTATGCGCT GGTCACGAAG CTTGCAGGAA AGTCATACAG TGCGATGACG
GCATGGAAGG ACGTCAAGGT TCGCGACTGG CTAAAAACAC TGGATGCCCG TCAAAGCAGC
GATCTGCGCG ATGTCCTGGT GGAAGCGCGC CGCGACCTTC TCGATCCTGG CAACTCGCGC
CTTCTGGGCA TGCTGACATC GAAAAAGACC CGCGCCAATG TCGAGACGGT ATACAAGGCG
GCGACTACGG GTTCGGATCC GGCACAGGAA ACCTATTCCG TGTTCAATCA GTCCATTGCC
CGCAATCTGC TGAATATTGA ACTGCTTCTC GAAAGCGCGG AGGGAACACG CGTCTGA
 
Protein sequence
MSGHLPASYS SLPAEDMIIV SGPETHKPAE QDIIVFGTPI HENVPQLVDR YLSNDLPGFL 
AHQARHGIGS YVLADFREGR LRMITGPGYC GGYVRSTSEG IAVTTLLRDV MRFSPGELRF
NDFSLCYFLS SVPASTFGML PLSTLFKGVD RLPPASVLEI SGGSVTVCRT YLNIAELERP
ASLEEAVLEV AEKYADYYRR SDLQPAVMFS GGVDSLLILL AMQQVMDPKD IRIFTVQTMR
THSKTNGHHR AYPVAQNLGL DIELIESDSL RSGGAVSAIL GRMQLDMANT RAPDLAFADH
PDIGTLVLHG QNMDALVNNN MLSLQSNLEL GYLSNAKVSD LTTDELHLKQ LTALTRNMRF
TDAYLQDAEF QRTTVRYFRK MTPNTIADPQ AGTTSGIMRG MIATQYPNLL NQPQKPFSIF
SQVAEMSSEA TRMNGYLGQN ATETGLVDLL RFYGYGQIAM KRGCSVPLSS GTRISYAPMS
GPLVSYFLGR PRGLLEASQP KREVYALVTK LAGKSYSAMT AWKDVKVRDW LKTLDARQSS
DLRDVLVEAR RDLLDPGNSR LLGMLTSKKT RANVETVYKA ATTGSDPAQE TYSVFNQSIA
RNLLNIELLL ESAEGTRV