| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3428 |
|---|
| Symbol | |
|---|
| ID | 4581984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 570897 |
|---|
| End bp | 571439 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639770742 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_917195 |
|---|
| Protein GI | 119386140 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.21898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAA CGACTTTCCC TGAAACCCGG CCCTTCGGGT GCATCATCTC AACCATCGAC
TTCTTGACCG GCATCGGCGG CTATGCCGCG GCGCTCAGCC TGCTGGGCAT CCTCGGGCTG
ATCCTGGCCG AGATATTCAC CCGCAACTTC CTGGCCAGCT CGCTGCATTT CTCGTGGGAT
CTGGCGGGGT ATCTGATGGG CGCCTGCTTC CTGCTGGGCT GCGGCTCGGC CATGAAGGCG
GGCAGCCATG TGCGCGTGAC CGCCCTGATC GAAATCTCGT CCCCCATCGT CGGGCGGGTT
CTGGAGATCG CCTCGACGCT CGTGGGGCTG GCGATATGCG GCGCGCTCAG CTGGGCGCTG
ATCGACATGG CCGTTCTCTC GGGCCAGCGC GGCTCGACCG CCGCGACGAC CTTCCGTGTG
CCGCTGGTCT ATCCGCAGGC GGTGCTGGCG GCAGGTGCGG TGCTGTTGAC GCTGCAATGC
CTGGCGCAGG TCCTGCGCCT GCTGCGCGGC GAGGCGCTGA CCTCCGGTCC CGGTCTGGAA
TAG
|
|---|
| Protein sequence | MLETTFPETR PFGCIISTID FLTGIGGYAA ALSLLGILGL ILAEIFTRNF LASSLHFSWD
LAGYLMGACF LLGCGSAMKA GSHVRVTALI EISSPIVGRV LEIASTLVGL AICGALSWAL
IDMAVLSGQR GSTAATTFRV PLVYPQAVLA AGAVLLTLQC LAQVLRLLRG EALTSGPGLE
|
|---|
| |