Gene Pden_3225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3225 
Symbol 
ID4581789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp388262 
End bp390559 
Gene Length2298 bp 
Protein Length765 aa 
Translation table11 
GC content64% 
IMG OID639770549 
Product3-hydroxyacyl-CoA dehydrogenase, NAD-binding 
Protein accessionYP_917002 
Protein GI119385947 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAACCG CCATCGAAAA GGTAGCCGTA CTTGGCGCTG GCGTCATGGG CGCAGGCATT 
GCCGCGCATC TGGCGAATGC GGGTGTGCGG GTCGTTCTGC TGGATGTCGA CAAGGCGGCA
GCCGATGCCG GCATCCGGCG CGCGCGCGAC GAGGGTGGTT TCATGGACCC GGCATTCGCG
GCCCGCATCG CGACGGGATC GACCGTCAGG GACCTTTCCC TTCTCGCGGA CGCGGATTGG
ATCGTCGAGG CCTTGCCCGA GCGGTTGGCG CTGAAGCAAA GCCTTTACCG GCAGCTTCAA
GGCATACGCA AACCCGGCTC GATCTTGTCA TCGAACACCT CGACGATACC GCTTGCCGCG
CTGGTCGGCG GCATGGCCGG GGACTTCGCG GCCGATTTCC TGATCACCCA TTTCTTCAAC
CCACCGCGGC GGATGCGGCT GCTGGAACTG GTCGCGGGTC CGGCCACCCG CCCCGAGATC
GTCGCCCTGA TCACGGACTT CTGCGACCGC AGGCTGGGCA AGGACGTGGT GTCCTGCCGC
GACACTCCGG GATTCATCGC CAACCGGATC GGCAATTACT GGATGATCAC CGCCCAGAAC
GAAGCGATCC GGCTGGGATT GGACATCGAG GACGCGGATG CGATCATCGG GCGTCCATTC
GGCATTCCGG CGACGGGAAT CTTTGGCCTG ATGGATCTGG TCGGCATCGA CCTCGTCCCT
ACCGTTATTC GCAGCTTGCA AGACGCACTG CCGCCCGAAG ATGCGATCAA CGCCTATGAG
GCCGAACCAC CAATCGTCGG CCGGCTGATC GCCGAAGGAC GCACGGGGCG CAAGGCGGGC
GCCGGCTATT TCCGGCGTTC TGCCGGGCGG GTGCAAGAGG TGATGGATCT GAAGACCGGC
GACTACCGTG CGAAGCGGGA CGGCATCCCG GCATGCGTTG CAGAAACCCA CGGCGATCCG
CGAAAGCTGA TGGAGCACGA TTCTACGGGT GGCGAATATG CCCTGCGCGT GATGCAGGGT
ACGCTTGCCT ATGCGGCGAG CCTTGCGCCC AAGATCGCCG ACGGCCCCGA TGCGGTCGAT
GACGCGATGC GCGGCGGCTA TGGCTGGAGT ATAGGGCCCT TCGAAATGAT CGACCGGCTT
GGACCGGATT GGCTCGCCGG CGTTATTGCG GCAAGCGGCG AAACCTTGCC GCCCTATCTT
GCCCTAGCGG CGGAACGCGG CGGCTTCCAT TCGATCCGCG ACCGCATCAG AACCGCACTT
CTGCCGGATG GAGGCACGGC GCCCCGCCGT CGCACCGAAG GCGCCCTGAG CCTTGGCGAA
CTGACCCAGT CGGGCAAGCC CTTTGCGGAT AACGGCTGCG CGGCGTTGTG GGATATAGGC
GAAGGCGTCG CTTGCCTGGA AATCCGCACC AAGATGAACA CCCTGTCGCC GCCTCTGCTG
GAGGCTATCG ACAAGGCTCT TGACGCCGTG GGCCAGAACT TCAGGGCCTT GGTCATCGGC
AGTGACGCGC CTCGGTTCAG CGCCGGGGCA GACCTGTCGG CGCTGCTTCG CGCTGTCGAG
GCGGGCGGAC CGGATGAACT TCTCAGGACC ATCCACGCGG GACAACGGGT CTTCGCGGCC
ATCAAGCGGG CGCCCTTCCC TGTCGTCGGA GCGGCCACCG GCATCGCACT TGGCGGCGGG
TGCGAGCTGC TTTTGCACTG CGACGCGATC CAAGCCCATG CGGACCTTCA GATGGGCCTT
GTCGAGACGA AAGTAGGGTT GGTTCCAGGC TGGGGAGGAT GCAAGGAGCT TTTGCTGCGC
ACCACCGCCG CACCTTCCGG GGGGCGTGGA CCGGCGGCGA TTGCAGCCAG CGTGTTTGAT
GTGATCGCCA ATGCACGCGT GTCATCAAGC GCATTCGACG CGCGCAAGCT TGGATACCTG
CGCCCTTCGG ACAACATCAC GATGAACCTC GACCGGTTGC TGGCCGATGC ACGGCAATGC
GCGCTTGAAC TGGCAGACGG ATACGCCGCG CCGCAAGCGG AAACGCTTGC CTTGGCAGGC
CCTTCGGGTC TGTCCGGTCT CGAGGCCCAG ATCGACAGCG GGGTTCTGAG CGGTCGGATG
ACCGCCCATG ACAGGCAGAT CGGCCTCGCA CTCGTAGGTA TCCTGACCGG CGGTGCCCTC
GCTGACCCGA TCCGCCCGCT GTCTGAGGAT GAGCTGCTGG CGCTGGAAGC CGAGGCATTC
ATCGAACTGT TCTACACACC GCAAACCCGT GATCGCATCG ACCATATGCT TGCAACCGGA
AAACCTTTGC GGAACTGA
 
Protein sequence
MITAIEKVAV LGAGVMGAGI AAHLANAGVR VVLLDVDKAA ADAGIRRARD EGGFMDPAFA 
ARIATGSTVR DLSLLADADW IVEALPERLA LKQSLYRQLQ GIRKPGSILS SNTSTIPLAA
LVGGMAGDFA ADFLITHFFN PPRRMRLLEL VAGPATRPEI VALITDFCDR RLGKDVVSCR
DTPGFIANRI GNYWMITAQN EAIRLGLDIE DADAIIGRPF GIPATGIFGL MDLVGIDLVP
TVIRSLQDAL PPEDAINAYE AEPPIVGRLI AEGRTGRKAG AGYFRRSAGR VQEVMDLKTG
DYRAKRDGIP ACVAETHGDP RKLMEHDSTG GEYALRVMQG TLAYAASLAP KIADGPDAVD
DAMRGGYGWS IGPFEMIDRL GPDWLAGVIA ASGETLPPYL ALAAERGGFH SIRDRIRTAL
LPDGGTAPRR RTEGALSLGE LTQSGKPFAD NGCAALWDIG EGVACLEIRT KMNTLSPPLL
EAIDKALDAV GQNFRALVIG SDAPRFSAGA DLSALLRAVE AGGPDELLRT IHAGQRVFAA
IKRAPFPVVG AATGIALGGG CELLLHCDAI QAHADLQMGL VETKVGLVPG WGGCKELLLR
TTAAPSGGRG PAAIAASVFD VIANARVSSS AFDARKLGYL RPSDNITMNL DRLLADARQC
ALELADGYAA PQAETLALAG PSGLSGLEAQ IDSGVLSGRM TAHDRQIGLA LVGILTGGAL
ADPIRPLSED ELLALEAEAF IELFYTPQTR DRIDHMLATG KPLRN