| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3007 |
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| Symbol | |
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| ID | 4581573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 178458 |
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| End bp | 180536 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639770333 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_916786 |
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| Protein GI | 119385731 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0304198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGAC GTAAAATCCC GGTGCTGCTT GGCACGGTCG CCATGCTGGC ATTGGCCACG
GCCCCCGCGC TGGCTCAGGA CAATCAGGGC ATGGCCGAGA CGCTGCGGCT GGACGAAATC
GTCCTGACCG GCGAAAAGCA GGCGCGCAGC ATCAAGGATA CCGCCTCTTC GGTGGCCGTC
CTGACCACGC GCGACCTTGA GGAGAGCGGC GGGCAGGACA GCATCGCCGA TGCGGCGACG
GGCATCGCCA ACGTGACCTA TGTCGCCTCG GGCGGCCAAG GCGGCGCCCC CACCATCCGC
GGGCAGGACA GCGAAGGCCC CAATTCCGGC GCGGTGGCCT TCTTCGGCGG CACGGCCCCG
CGGCTGGCCT TCAATCTGGA CGGTCATTAC CTAGGCTATA ACGAGATCGT CTGGGGCAGC
CAGGCGCTTT GGGACGTCGA GTCGATCGAG GTCTTTCGCG GCCCACAGAC CGCGACCCAG
GGCGCAAACT CGATCGCCGG GGCGATCATC GTCAAGACCA AGGATCCGAC TTTCCAGCCC
GAGGGCGCCG CGCAGCTGGA ATATGGTAGC CACAACCGCC GCCGCGCCAG CCTGATGGCC
TCGGGACCCT TGTCCGAGGA TCTGGCCGGG CGCATCGCCG TCGACTACTG GGCGCGCGAC
AATTACATCG ACTATACCAA CCCCGACTTC GCGGTGGGCT CGACCGACCA GAACCATGAA
TCCCGCACCA TCCGCGCCAA GCTGCTATGG CAGCCGAAGG ACCTGCCGGG ATTCGAGGGC
AAGCTGACCT TCTCGCACAG CCTGACCAAC CGGCCGAACT GGGAAGCCGC GACCGAGCCC
TATGAGGATC TGGAAAGCGC CACCGCCTCG AACCCCAGCT GGCGGCTGCG CACGAACACC
ACCATCCTGG ATGTCAGCTA TGATTTCGGC AATGGCTGGA CGGTGTTCAA CCAGCTGCAA
TATTCCGATA TCTGGGTCAA ACGCTCGACC GAGCCGGTCA ACGCGGGCAC GGCGATCCTG
GACCAGGACG TGACCTCGAA CGAGACGCGC GTGACCTTCG GCTCGCCCGA GGACCGGATC
AGCGGCGTGG CGGGACTGTT CGTCTCGCGC ACCGATTCGG ACGAGCTTCT GGATTACCGC
GGCACCACCA CCTATGACGA CCGCAAGGAC AGCCTGGGGA TATTCGCCGA AACCACCTGG
CGCCTTGCCG ACCGCTGGAG CCTGACCGGC GGGCTGCGCT ATCAGCGCGA CGACATCACC
CGGCGCGGCG TGTCGAGCTT TACTCCGAAC GTGCTGGATT ACGACGAAAG CTTCGACGCC
TGGCTGCCCA AGCTGGCGCT GGCCTATGAC CTGGACGCAT CGACCCGCAT CGGCGCCATG
ATCAGCAAGG GCTACAACCC CGGCGGGGTG ACGCTGAACC TGACCAGCGG CGAATATGTG
CCCTTCGACG CCGAGACCTC GTGGAACTAC GAGATCTTCG GCCGCACCCG GTTGCTCGAC
GACCGGCTGG AGTTGACCGG AAACCTCTTC TACACCCAGC TCCATGATGC GCAGCGCTAT
GTCGTGACCA GCCTGCCCGA GAACATCGGC AGTTCGATCA CCGTCAATGC CGAGCGCGCC
AAGTCCTATG GCCTGGAACT GGGGATGGAC TATCTGGTGC GCGACAATCT GCGGGTCAAG
GCGGGGCTGG GCCTGCTGCA TACCGAGATC AGCCGCTTCA CCAGCGCGGC GGCGGATTAC
CAGGGCCATC GCTTCGGCCG GTCCCCCGAC TATACGCTTT CGCTGGCGGC CGATTGGGAC
ATCACCCCGG AATGGCGGCT CAGCGGCCAG CTGCGCCACA CCGACGGCTA TTATTCCGAC
GACAACGAGG ACCGCGACAC CTGGGTCGAT TCCTATACCG TGGCCAATGC CCGGCTGACC
TGGCAACCGC GCGAGAACCT GCAGGCCTTC GCCTATGTCA ACAACCTGTT CGACGACCGC
TCGGTGACCT ATCTGCGGGC CAGCCGCTCG ATCGGCGGCT TCGAGGCCAC CGTGGTCGAG
CCACGTGAGG TGGGTATCGG CCTGAAGGTG ACGTTCTGA
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| Protein sequence | MNGRKIPVLL GTVAMLALAT APALAQDNQG MAETLRLDEI VLTGEKQARS IKDTASSVAV
LTTRDLEESG GQDSIADAAT GIANVTYVAS GGQGGAPTIR GQDSEGPNSG AVAFFGGTAP
RLAFNLDGHY LGYNEIVWGS QALWDVESIE VFRGPQTATQ GANSIAGAII VKTKDPTFQP
EGAAQLEYGS HNRRRASLMA SGPLSEDLAG RIAVDYWARD NYIDYTNPDF AVGSTDQNHE
SRTIRAKLLW QPKDLPGFEG KLTFSHSLTN RPNWEAATEP YEDLESATAS NPSWRLRTNT
TILDVSYDFG NGWTVFNQLQ YSDIWVKRST EPVNAGTAIL DQDVTSNETR VTFGSPEDRI
SGVAGLFVSR TDSDELLDYR GTTTYDDRKD SLGIFAETTW RLADRWSLTG GLRYQRDDIT
RRGVSSFTPN VLDYDESFDA WLPKLALAYD LDASTRIGAM ISKGYNPGGV TLNLTSGEYV
PFDAETSWNY EIFGRTRLLD DRLELTGNLF YTQLHDAQRY VVTSLPENIG SSITVNAERA
KSYGLELGMD YLVRDNLRVK AGLGLLHTEI SRFTSAAADY QGHRFGRSPD YTLSLAADWD
ITPEWRLSGQ LRHTDGYYSD DNEDRDTWVD SYTVANARLT WQPRENLQAF AYVNNLFDDR
SVTYLRASRS IGGFEATVVE PREVGIGLKV TF
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