| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2863 |
|---|
| Symbol | |
|---|
| ID | 4581450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 29772 |
|---|
| End bp | 31109 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639770190 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_916643 |
|---|
| Protein GI | 119385588 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.277434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.247685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGG CGCTGCCCGG CCAGTCCGGG AGACGCGCGA AGGCCGAAAT CTCGAACCGG
CGCGTGCTGG CCATCGCGCT GCCGGTGGTG CTGTCGAACG CGACGATCCC GATCCTGGGC
GCGGTCGATA CCGGCGTCAT CGGCCAGTTG GGCGAGGCCG CGCCGATCGG CGCGGTGGGG
CTGGGCGCGG TGATCCTGGC CTCGATCTAC TGGATCTTCG GCTTCCTGCG CATGGGCACT
TCGGGGCTGG TGGCGCAGGC CCATGGCGCC GGGGACGAGG GCGAATCCGG TGCGCATCTG
CTGCGGGCGC TGGGGATCGG GCTGGCGGCG GGGCTTGTCT TCATCCTGCT GCAGGGGTCG
CTTTTCGCCG CGGCCTTCCG GCTGGCCCCG GCCTCGGCCG AGGTCGAGGC GCTGGCCCGG
CAATATCTGG CGCTGCGCAT CTGGGGGGCG CCCGCGGCCA TCTCGCTATA CGCTATCACC
GGCTGGCTGA TCGCCATCGA GCGGACGCGC CGGGTGCTGG TGCTGCAACT GCTGATGAAC
GGGCTGAACA TCCTCCTGGA CCTGTGGTTC GTGCTGGGGT TGGGCTGGGG CGTGCGCGGC
GTCGCCGGGG CGACGCTGAT CGCGGAATGG TCCGGCCTGG CTCTGGGGTT GTGGTTCGCG
CGCCATGCCC TGCATGCGGC GATTCAGCGC GCCGGGCTGC TGGCCCGCGA GCGGATCCAG
GAACTGGCGC GGGTCAACGG CGACATCATG ATCCGTTCCG TGCTGCTGCA AGGCTCGTTC
ACCACCTTCA TGTTCATGGC TGCGGGGCAG GGCGACGTGA CGCTGGCCGC CAATCAGGTG
CTGCTGCAAT TCCTGTCCAT CGTCGCCTAT GGGCTGGACG GCTTTGCCTT TGCCGCCGAA
TCGCTGGTCG GGCAGGCGGT GGGCGCGCGC CGGCCCGACC GGCTGCGGCG TGCGGCCGCG
CTCAGCTCGG CCTGGGGTGT CGCGGGGGCC GCGCTGCTAT CGGCCGCCTT CCTGCTGGGC
GGGCCGGCGA TCATCGACCT GCTGACCACC GCGCCCGAGG TGCGGGCCGA GGCGCGGGAG
TTCCTGCCCT GGCTGGTCGC CGCGCCGCTG GTCGGCATCG CCTCGTGGAT GCTGGACGGC
ATCTTCATCG GCGCCACCCG CACGCGCGAG ATGCGCAATG CCATGCTGGT CACGGTCGGG
ATCTATGCCG TTCTGGTGGT GGTGCTGCCG CCGGTCTTTG GCAATCACGG GCTTTGGGCC
GCGCTGATGG GGCTGAACGC GCTGCGCGGC CTGACCATGT GGCGGCTGTA TCACCGGGTC
GAGGCTGCGG CGGCCTGA
|
|---|
| Protein sequence | MVEALPGQSG RRAKAEISNR RVLAIALPVV LSNATIPILG AVDTGVIGQL GEAAPIGAVG
LGAVILASIY WIFGFLRMGT SGLVAQAHGA GDEGESGAHL LRALGIGLAA GLVFILLQGS
LFAAAFRLAP ASAEVEALAR QYLALRIWGA PAAISLYAIT GWLIAIERTR RVLVLQLLMN
GLNILLDLWF VLGLGWGVRG VAGATLIAEW SGLALGLWFA RHALHAAIQR AGLLARERIQ
ELARVNGDIM IRSVLLQGSF TTFMFMAAGQ GDVTLAANQV LLQFLSIVAY GLDGFAFAAE
SLVGQAVGAR RPDRLRRAAA LSSAWGVAGA ALLSAAFLLG GPAIIDLLTT APEVRAEARE
FLPWLVAAPL VGIASWMLDG IFIGATRTRE MRNAMLVTVG IYAVLVVVLP PVFGNHGLWA
ALMGLNALRG LTMWRLYHRV EAAAA
|
|---|
| |