| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2853 |
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| Symbol | |
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| ID | 4581440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 18955 |
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| End bp | 21219 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639770180 |
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| Product | ribonuclease R |
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| Protein accession | YP_916633 |
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| Protein GI | 119385578 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAGC TACCCTCCCG GCAAGAGATT CTCGACTGGG TGTCCGCCCA CCCGGACGCC
ACCGCGAAAC GCGACATCGC GAAAGCCTTC GGCATCAAGG GTGCCGAACG GATCGAGTTG
AAGCGGCTTC TGAAGGAGCT GGAGGCCGAG GGGCTGCTGG AGCGCCGCCG CCGCCATTAC
CACGACGCAG AGCGCCTGCC GCCGGTCACG GTGCTGCAAT TGCTGCCGCC CGACCGAGAC
GGCGACATCT TTGCCAAGCC TTTGGAATGG CAGGGCGAGG GGCCGATGCC GCGCATCCTT
TACGCGGCGC TGAAATCCGA CCCGGCCGTC GCGCCGGGCG AGCGCATCCT GGCCCGGCTG
ATCGAGACCC GGGGCGAGGA TCACGACTAT CAGGCCCGGC TGATCCGCCG CATCGGCACG
GTGCAGCACC GCATCGTCGG CATCTTTCGC GCCGCGACCG GCGGGGCCGA GGCGGGGGGC
CGCATCCTGC CCATCGACAA GGGCCAGGAC AAGGAATGGC AGGTGCGCCC CGGCGATGTC
CATGGCGCGA AAAGCGGCGA GCTGGTCGAG GCCGAACAGG TCGGCCCGCG CGGTCGCCTG
GGCCTGCCCC TGGCGCGGAT CGTCGAGCGG CTGGGCGATC CCTCGGCACC CAGGGCCGTC
AGCCTGATCG CCATCCACCA GCACGGCATT CCCGACGATT TCCCCGACGA GGTGATCGCC
GAGGCCGATG CCGCCCGCCC CGCCACGATG AAGGGGCGCG AGGACCTGCG CCACCTGCCC
TTCGTCACCA TCGATCCCTC GGATGCGCGC GACCGCGACG ATGCCGTCGC CGCAGAGATG
CACGAGGACG GCGGCGCCAC GATCTGGGTC GCCATCGCCG ATGTGGCGCA TTACGTTCGC
CCCGGATCGG CGCTGGATCG CGAGGCGCGC AATCGCGGCA ATTCCACCTA TTTCCCCGAC
CGGGTGGTGC CGATGCTGCC CGATATCCTG TCGAGCGACC TGTGCTCACT GCACCAGGGC
GTGGACCGGC CGGTGATCGC CGTGCGCATG CGGCTGGACG CGCAGGGCGA CAAGACCGGC
CACAGCTTTC ATCGCGGGAT GATCCGCTCG GCCGCGAGCC TGGCCTATGA ACAGGCGCAG
GCGGCGGCGG ACGGCAATCC CGACGAACAG ACCGAACCGC TGGTCGAGCC GGCGATCCGG
CCGCTCTGGC ACGCCTACGG CCTGCTCAGG GCCGCGCGCC AGCGCCGCCA GCCGCTGGAA
CTGGACCTGC CCGAGCGCAG GATCGTGCTG ACCGCCGACG GAAGGGTGAA ATCGGTCAAT
TTCCGCGAAC GCTACGACGC GCACCGGCTG ATCGAGGAAT TCATGGTGCT GGCCAATGTC
GCCGCCGCCG AGGAACTGGA GCGACTGCGC CGGCCGCTGC TCTATCGCGT GCACGAGGAA
CCGACGGTCG AAAAGCTGGA CGCGCTGCGC GAGGTGGCCG AGGCTTCGGG CTTCACGCTG
GCCAAGGGGC AGGTGTTGCA GACGCGGCAC CTGAACCGGC TCCTGGAACA GGCCGAGGGT
TCGGAATTCG ACGAGCTGAT CAACATGACT GCGCTGCGTT CGATGCAGCA GGCCTATTAC
AACCCCGAGA ATTTCGGCCA TTTCGGGCTG GCGCTGCGGT CATATGCGCA TTTCACCTCG
CCGATCCGGC GCTATTCCGA CCTGATCGTG CACCGCGCGC TGGTCATGGG GCATAAATGG
GGCAATGACG GGCTGTCGGC GCAGGATATC GAGATGCTCT CGGAGACTGC GCAGCATATC
TCGGAAACCG AGCGGCGCTC GATGGCGGCG GAGCGCGACA CGACCGACCG CTATCTTGCC
GCCTATCTGG CCGACCGGGT GGGGGCCGAG TTCACCGGGC GCATCAGCGG CGTGCAGAAA
TTCGGCGCCT TCGTGCGGCT GGACGAAACC GGGGCGGACG GGCTTTTGCC GATTCGCGAG
ATCGGGCGGG AATATTTCCA CTACGATCCC GAGGCGCAGG TGCTGATGGG GTCCGAGACG
GGGCTTGAGA TCGGCATCGG CCAGCGCGTG ACCGTGCGGT TGACCGAGGC GGTGCCGCTG
ACCGGCGGGC TGATGCTGGA ACTGCTGGAA CTCGAGGGCC GGCCGCTGCC GCGGGGTTCG
GCCGGCGGGC GCGGCAAGGG GCCGATGCGC AAGCGCGCGA CCCAGGCCCG GCTGGCCGAG
ATCAAGCGCG CGCAGAAGCG CCGGCGGGTT CGGCGGCAAC GCTGA
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| Protein sequence | MAQLPSRQEI LDWVSAHPDA TAKRDIAKAF GIKGAERIEL KRLLKELEAE GLLERRRRHY
HDAERLPPVT VLQLLPPDRD GDIFAKPLEW QGEGPMPRIL YAALKSDPAV APGERILARL
IETRGEDHDY QARLIRRIGT VQHRIVGIFR AATGGAEAGG RILPIDKGQD KEWQVRPGDV
HGAKSGELVE AEQVGPRGRL GLPLARIVER LGDPSAPRAV SLIAIHQHGI PDDFPDEVIA
EADAARPATM KGREDLRHLP FVTIDPSDAR DRDDAVAAEM HEDGGATIWV AIADVAHYVR
PGSALDREAR NRGNSTYFPD RVVPMLPDIL SSDLCSLHQG VDRPVIAVRM RLDAQGDKTG
HSFHRGMIRS AASLAYEQAQ AAADGNPDEQ TEPLVEPAIR PLWHAYGLLR AARQRRQPLE
LDLPERRIVL TADGRVKSVN FRERYDAHRL IEEFMVLANV AAAEELERLR RPLLYRVHEE
PTVEKLDALR EVAEASGFTL AKGQVLQTRH LNRLLEQAEG SEFDELINMT ALRSMQQAYY
NPENFGHFGL ALRSYAHFTS PIRRYSDLIV HRALVMGHKW GNDGLSAQDI EMLSETAQHI
SETERRSMAA ERDTTDRYLA AYLADRVGAE FTGRISGVQK FGAFVRLDET GADGLLPIRE
IGREYFHYDP EAQVLMGSET GLEIGIGQRV TVRLTEAVPL TGGLMLELLE LEGRPLPRGS
AGGRGKGPMR KRATQARLAE IKRAQKRRRV RRQR
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