| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2804 |
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| Symbol | |
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| ID | 4581383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 2825242 |
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| End bp | 2825889 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639770130 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_916584 |
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| Protein GI | 119385528 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.257511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCTTTC TCTACCAGCC GACGGCCGAA CAGCCGCGCG TGATCCATGC CGATCACGAG
ATCCTGGTGG TCGAAAAGCC GGCTGGGCTG CTTTCCGTTC CCGGCCGGGG CGAGGATCGC
GCCGATTGCC TGATCGAGCG GCTGCGCGGC GCCTTTCCGA CCGTGCTGCT GGTGCATCGG
CTGGACATGG ACACATCGGG CGTGATGGTC TTTGGCCTGA CCCCGCATGC GCAGCGCCAC
CTGTCCAGGC AATTCGAGGA CCGGCGGACG AAAAAGACCT ATGTCGCGCG GCTCTGGGGC
CGGCTGGAGC CGAAAACAGG CATGGTGGAC CTGCCGCTGA TCGTGGACTG GCCGAACCGT
CCGCGACAAA AGGTCGATCA TGCCGAGGGC CGGCCGGCGC AGACGGAATG GCGGGTGGTC
AAGGCGACGG ATGCCGAGAC GCGGGTGCGG CTGATGCCGA TCACCGGCCG CAGCCATCAG
TTGCGCGTGC ATATGGCCCA GCTTGGCCAT CCGATCCTGG GCGATCCGCT TTATGCGGCC
GGTGCGGCGG CGGATTTCCC GCGGCTGATG CTGCATGCCG AAAGCCTGCG CTTCAAGCAT
CCCGAAACCG GGGTGATGCA AAGCTTTACC GCGCCCGCGC CCTTCTAG
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| Protein sequence | MSFLYQPTAE QPRVIHADHE ILVVEKPAGL LSVPGRGEDR ADCLIERLRG AFPTVLLVHR
LDMDTSGVMV FGLTPHAQRH LSRQFEDRRT KKTYVARLWG RLEPKTGMVD LPLIVDWPNR
PRQKVDHAEG RPAQTEWRVV KATDAETRVR LMPITGRSHQ LRVHMAQLGH PILGDPLYAA
GAAADFPRLM LHAESLRFKH PETGVMQSFT APAPF
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