Gene Pden_2510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2510 
Symbol 
ID4580148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2529222 
End bp2530475 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content70% 
IMG OID639769839 
Productlytic murein transglycosylase 
Protein accessionYP_916293 
Protein GI119385237 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.577172 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGAC GCATTTCCCG CATCGCGACC TCGGCCGTGC TGACCATCGC CCTGGCAGGC 
TGCGGCGTGT CGCTGAACCA CACGCCGGGC ACCGTCGGCG GCGGCAATTT CGGCGGATTG
CCCACGGCGG GCGGGCAGGG CTCCGAGGCG GGCTTCCAGA ACTGGGTGCA AAGCTTCCGC
CCGCGCGCGC TGGCGGCCGG TGTCTCGCCC GGCACGTTCG ACAGCGCCAT GGCCGGGGCG
CACTACCAGC CCAGCATCGT CGCGCTGGAC CGCAAGCAAA GCGAATTCAC CAAGCCGATC
TGGGAATATC TCGACGGTGC CATCGGCACG CGCGGGGCAA CCGGCCGTGC CAAGGCCGCG
CAATATGCCG GCACGCTCTC GGCCATCGAG GCGCGCTACG GCGTCCCGCG CGAGATCGTG
CTGGCGGTCT GGGGCATGGA ATCGAATTTT GGCGCCAATC GCGGCAACAC CCGGATCGTG
CCGGCGCTGG CGACGCTGGC CTATGACGGT CGCCGCGGCG AATTCTTTGC CGGCGAGCTG
GTGGCGGCGC TGCGCATCAT CCAGTCCGGC GATGTGGACA GCGCCCATAT GGTCGGCAGT
TGGGCCGGGG CCATGGGGCA TACGCAATTC ATGCCGTCGT CCTTCCTCAG CCATGCCGTG
GACTTCAACG GCGACGGCCG TCGCGACATC TGGTCGAACG ATCCGACCGA TGCACTGGCC
TCGACCGCCA GCTACCTGCG CCAGAACGGC TGGCGCCCCG GCCAGCCCTG GGGAGCCGAG
GTGATCCTGC CGCCGGGCTT CGACTTCAAC CGGTCCGGCA AGTCGGTGCA GCATTCAGGC
AGCCAATGGG CGGCGATGGG GGTGCGCACG GTCAGCGGCG CGCCGGTGCC CTCGGGCTCC
ATCCTGGCCC CGGCGGGGGC GCGGGGTCCG GCCTTTCTCA TCACCGACAA CTTCCGCGCC
ATCCTGAAAT ACAACGCCTC CGACAGCTAT GCCCTGGCCG TCGCCTATCT GGGCGAGGCC
ATCGCCGGCC GCCGCGGCAT CCAGGGCAAC TGGCCGCGCG GCGACCGCAC GCTGTCGAAC
AACGAAAAGG CCGAGATCCA GCGCCTGCTG ATGGCGCGCG GCTTCGATAC CGGCGGGGTG
GACGGCAAGC TGGGCGGCCA ATCGACCGAG GCGATCCGGG CCTTCCAGCG CTCGCGCGGC
GTGACGCCCG ACGGCTATGC CGATACCCGC CTGCTGGCCA TGCTGCGCGG CTAA
 
Protein sequence
MTRRISRIAT SAVLTIALAG CGVSLNHTPG TVGGGNFGGL PTAGGQGSEA GFQNWVQSFR 
PRALAAGVSP GTFDSAMAGA HYQPSIVALD RKQSEFTKPI WEYLDGAIGT RGATGRAKAA
QYAGTLSAIE ARYGVPREIV LAVWGMESNF GANRGNTRIV PALATLAYDG RRGEFFAGEL
VAALRIIQSG DVDSAHMVGS WAGAMGHTQF MPSSFLSHAV DFNGDGRRDI WSNDPTDALA
STASYLRQNG WRPGQPWGAE VILPPGFDFN RSGKSVQHSG SQWAAMGVRT VSGAPVPSGS
ILAPAGARGP AFLITDNFRA ILKYNASDSY ALAVAYLGEA IAGRRGIQGN WPRGDRTLSN
NEKAEIQRLL MARGFDTGGV DGKLGGQSTE AIRAFQRSRG VTPDGYADTR LLAMLRG