| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2453 |
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| Symbol | |
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| ID | 4580786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2459594 |
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| End bp | 2463124 |
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| Gene Length | 3531 bp |
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| Protein Length | 1176 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639769782 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_916236 |
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| Protein GI | 119385180 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.322795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTATCC TCAAGGCCAT ATTCCGGTTC TTCCTGTCTC GCGGCTTCTG GACCTTCGTC
GGGCTGGCGC TGCTGGCGGC AGCGATCTGG TTCTATGGCC CGCTGGTTTC GGTCGGCGAG
GCGGCACCGC TGGAAAGCGC CGAGGTCCGC GCGCTCTGCC TGGGCGCCAT CCTGGTTCTG
TGGCTGCTGA TCCTGCTGGT CGGCCAGATC CGCGCCGCGC GGCGCAACCG CATGTTCGTC
ACCGAACTGG CCGCGCCACC GCCCCTGCCC GACACGCCCG ATGCGGCGGC CGAGATCGGC
GGCAAGTTCC AGGAGATCCT GGCGACACTG GCGCGCTCGC GCCTGGGCAA GCGGCGCTTT
TTGCGCGAGA TGCCCTGGTA TGTCATCATC GGCCCACCCG GCACCGGCAA GACCACGGCG
CTGCGCCAGT CGGGGCTGAA CTTTCCCATC GCGCTGAACG ACGACCTCAA GGGGGTTGGC
GGCACGCGAA ACTGCGACTG GTTCTTTACC GAAAACGCCG TGCTGGTCGA CACCGCCGGC
CGCTATACCG ACCAGTCCAG CGAACCCGAG CGCGATGCGG CGGAATGGGC CGGCTTCCTC
GACCTGCTGA AAAGGCATCG CGGCCGGCGG GCGCTGAACG GGGTAATCGT CGCCCTGTCG
CTGGACGAGT TGCTGGGCCC CGAGGACGCG CTGCGCCGCC ACGCGCGCGA GATCCGCAAG
CGCCTGACCG AGATCGCCGA GCGGCTGGAG ATGCAGCTGC CGGTCTATCT GATGCTGACC
AAGGCCGACC GGCTGCCGGG CTTCGAGACG TTCTTCGGCG CGCTGACCTC GGCCGAGCGG
GCGCAGGTCT GGGGCGCCAC CCTGCCGGTC GACGCCCTGC CCGAGCCCGA GGCGATCACC
CGCGAGTTTC GCAGCCTCGC CGCCGTGCTG GAGGGCCGGC TGGACGCACG GCTGGCCGAG
GATGCCGACC TGCCGCAGCG CGCCGCGATC TTCCGCTTTC CGGCCGAGTT CGAGCGGCTG
GAGGCGCCGC TCCGGCTGCT GATCGACACC GCCTTCGGCG AAAGCCGCTA TGAGCAGACG
CCCTGGCTGC GCGGCTTCTA CCTGAGCTCG GCCACGCAGG AGGGCTCGCC GCTGGACCGG
ATGCTGGCGG GGATGGCGGC GGGCTTCGGC CTTGCGCCCG CGCCGGTGCC GCATCGCGCG
ATGGGCGAGC GGCGGTCGTT CTTCCTGCAC GACCTGCTGG CCGGGGTGAT CTTCGGCGAG
GCGGGCTTGG GCCTGTTCGA TCCGCGCGCC GAGGAGCGCC GGACATGGAT CTGGCGCGGC
TCGGCCGTGG CGGCGGCGCT GCTGGTGCTG CTGGCGGGCC TGGGCTTTCT GTTCAACACC
ATGCGCCAGT CCGGCGCGGT TGCGGACCAG CAGCGCCTGC TGGCCGACCT TGCGGGGCGG
CTTGCCAACG CCGCCTCGCG ACAGGCCCCG ACCGAGCCCC TGGACCTGCC CGTCGCCCTT
GACGCCATGA CCGAGATCGA GGCGGCCCGG ACGCCGGTGC CCGGCGGGCC GCTGGCGCTG
ATCGGCCCCT CGGCTGCGGC CGAGATCGAG GGCGCGGCCC GGCTGGCACG CGAACGCGGA
CTGCGCAACC TCCTGGAGCC GCGCATGGTC GCCTTTCTGG AGGCGACGAT GTGGCGGCAG
ATCCGCGACC CGGATTTCCT GCTGGGCGCG CTGAAAGCCT ATCAGATGCT GACCGGGCTT
GGTCCCTATG ACCGCGCCTG GCTCGCGGAA TGGTGGCAGG AGGTGCTGCC CGCCTTTGCC
GCCGAGACCC CCTTCCCGAC CGAGGCCGCG CGCCTGTGGC AGCTTGCCGC GCTGGACCGG
CTGGGCGGCG ACGAAAGCCG CATCGAGGCC AATCCGCAGC TGGTCGAGGC CGCCTTGCAG
GCGATCTGCA CCGTGCCCTT GTCGCTGCGC ACCTATCGCG CGCTGATGTC CGAACCCGAG
ATCGCCACCC TGCCCGACTG GATACCGGCG GAAAAGGCCG GGCCGCTGGC GGGGCAGGTG
CTGACGCGGC TGTCGGGCCA GACCCTGCGC CAGGGCATTC CCGGCGCCTT TACCTGGCAG
GGCTTTCACG GCACGGTGCT GCCGATGCTG CCCGGCATGG CCGAGGCGGC GCTGAACGAC
CGCAAGGTCT TTGCCGGCGG CTGCGCGGAA AGCGCCGATG CCTCGGCCGC CTCGCTGCAA
GCCGACATGA TGAAGCTTTA CCAGGACGAT TTCATCAATG CCTGGGAGGG GTTCCTGCGC
GACGTGCGGC TGGCGCCGAT CCCCGACCTG GCCACCGCCA CCGCGAACCT GAAGGACCTT
GCCAGCCCCG ACAGCACGCT GAAGCGGCTG CTGAACGCCG TCGTCGCCGA AACCGACCTG
GCGCGACCGC CCGAACAGGG CGACAGCCCC GAGATCAATC CCGGCGTGCT GAAGAAGGTG
GCCGGCAAGC TGGGCCTTGG CGCCGCAGCC AGGATCGGCA CCAAGGTCGC CGCCGCCGCC
CGCCGTCCGG GAGAGCCCGA GCCGCCGCCG CCCGGGGCCG AGATCGCCCG GCATTTCGCC
CCGCTCAAGG CCATCGTCGC CGAGGTGGAC GGCAAGCCGC CGCTGATCGC GGATGCCGAG
ACGGCGCTGG GGGCGCTGTC CAAGGAGCTT CTGACCGTGC AGGCCAGCCC CGATCCGCAG
GCGGCGCTGT TGTCGCGCGG CGGGCTGCCG CAATTGACGG GCGATCTGCG CAATGTCGCG
GCCACCCTGC CCGACCCGGT CAACGCCTGG CTGGGCGCCA TCGCCGGCGA CACGATCAGC
GTCACGCGCG AGGCGATCCT GGCCCAGCTC AACGCGCGCT GGCGGGCGGA TGTGCTGCCC
TTCTGCCGCG CGGCGACGGG GGGGCGCTAT CCCTTCGTCG CGGATTCGGC CATCGACGTG
ACGGTCAGCG ACTTCCAGCA GCTTTTCGGA CCCGGCGGCC GCTTCGACGG CTTCACCAAC
GAGACGCTGG CGCCCTATGT CGATACCAGC GCGCGGCCCT GGCGCTGGCG GGCCGACCTG
GGGCTGGACG CCCGCACGCT GGCCCCGTTC GAACAGGCCC GCGCCATCCG CGACGCACTG
TTTCCGGGTG GTGCCGGGCC GGTCATGGCC TTTACGCTGG AGCCGAAGGA CCTGACCCCC
AATGCCGCGC GGGTGACGCT GAACGTGGAC GGGCAGAGCC TGGTCTATTT CAACGCCGCC
GCCCGGCCGA TGCCGATGAC CTGGCCGGGC AAGGACGGCA CCAACCTGAT CTCGCTGAGC
TTCACCCCGG TGGATGGCAC GGGCGAGGCG ATCAGCACCG AAACCGGCGC CTGGGCCTGG
CTGCGGCTGG TGCGCAAGGC CGGGCTGTCG CCCACCGCGC TGCCCGAGGT CTTTGGCCTG
CGGCTGGGCA TCGGCCCCTA TGCCGCCCGG TTCGAACTGC GCGCGGCTTC GGTCGAGAAT
CCCTTCGATC TCAGCATGTT CGGTGCCTTC CGATGCCCGG AAGCGTTCTA G
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| Protein sequence | MRILKAIFRF FLSRGFWTFV GLALLAAAIW FYGPLVSVGE AAPLESAEVR ALCLGAILVL
WLLILLVGQI RAARRNRMFV TELAAPPPLP DTPDAAAEIG GKFQEILATL ARSRLGKRRF
LREMPWYVII GPPGTGKTTA LRQSGLNFPI ALNDDLKGVG GTRNCDWFFT ENAVLVDTAG
RYTDQSSEPE RDAAEWAGFL DLLKRHRGRR ALNGVIVALS LDELLGPEDA LRRHAREIRK
RLTEIAERLE MQLPVYLMLT KADRLPGFET FFGALTSAER AQVWGATLPV DALPEPEAIT
REFRSLAAVL EGRLDARLAE DADLPQRAAI FRFPAEFERL EAPLRLLIDT AFGESRYEQT
PWLRGFYLSS ATQEGSPLDR MLAGMAAGFG LAPAPVPHRA MGERRSFFLH DLLAGVIFGE
AGLGLFDPRA EERRTWIWRG SAVAAALLVL LAGLGFLFNT MRQSGAVADQ QRLLADLAGR
LANAASRQAP TEPLDLPVAL DAMTEIEAAR TPVPGGPLAL IGPSAAAEIE GAARLARERG
LRNLLEPRMV AFLEATMWRQ IRDPDFLLGA LKAYQMLTGL GPYDRAWLAE WWQEVLPAFA
AETPFPTEAA RLWQLAALDR LGGDESRIEA NPQLVEAALQ AICTVPLSLR TYRALMSEPE
IATLPDWIPA EKAGPLAGQV LTRLSGQTLR QGIPGAFTWQ GFHGTVLPML PGMAEAALND
RKVFAGGCAE SADASAASLQ ADMMKLYQDD FINAWEGFLR DVRLAPIPDL ATATANLKDL
ASPDSTLKRL LNAVVAETDL ARPPEQGDSP EINPGVLKKV AGKLGLGAAA RIGTKVAAAA
RRPGEPEPPP PGAEIARHFA PLKAIVAEVD GKPPLIADAE TALGALSKEL LTVQASPDPQ
AALLSRGGLP QLTGDLRNVA ATLPDPVNAW LGAIAGDTIS VTREAILAQL NARWRADVLP
FCRAATGGRY PFVADSAIDV TVSDFQQLFG PGGRFDGFTN ETLAPYVDTS ARPWRWRADL
GLDARTLAPF EQARAIRDAL FPGGAGPVMA FTLEPKDLTP NAARVTLNVD GQSLVYFNAA
ARPMPMTWPG KDGTNLISLS FTPVDGTGEA ISTETGAWAW LRLVRKAGLS PTALPEVFGL
RLGIGPYAAR FELRAASVEN PFDLSMFGAF RCPEAF
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