Gene Pden_2452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2452 
Symbol 
ID4580785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2458202 
End bp2459593 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content75% 
IMG OID639769781 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_916235 
Protein GI119385179 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.154769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGGCG ATCCGAACGA TCCCTTCGGC CTCGGCGACC CCGGCCGCAC CCGGATCCGC 
CCCTTGGGCG CGGGCCGGCC GCAATCCCAG CCCGATCCGC CCGGTCCGAT GCTGCCGCGC
CCCGCCTGGC AGGCGCCGCC CGATCCCGTC GCGCCCGAGG CCGCGCCCCA TGCCCGGCGC
GGGCGGGCGC ATCCCAACCC GCTGGTCGCC GCCCATGCCA CGCTGCTGGA ACTGGCGCCC
GAGCTTGAGC GCGCCAATCC CCCCGCCCGC CCCGATGCGC TGCGGGCGCG GCTGCAATCG
GTGCTGGTCG AGGGGCGCGA CGCCTCGGTC GCCGCCGGCA CGCCGCTGAG CCGGGCCGAC
CAGGGCGCCT GGTTCGTCGC CGCCCTGCTG GACGACCTGG CACTGAACAC GCCCTGGGGC
GGGCAAAGCG ACTGGCCCCG GCAGCCCTTG GTGACGCAGA TGACCGGCGA GGTCGATGCC
GGCACCCGCT TTTTCGACCG GCTGGACACG CTGATGCGCA ACCCGGCGGG CGAGCGCGAC
CTGCTGGAAC TGGCGTGGCT GTGCCTCTGC CTGGGCTTTC GCGGCAAGTA TCGCGTGCAG
GGCGGCGCCG GCGAAGGCGC GCTGGTGGCG CTGCGCGCGC AAATCGCCCG GCTGCTGCGC
GACCCGGAAC GCGAGGCCGC GCCGCTGGCC CCGCATGGCG CCGGAGTGGT CGCGCCGGAT
ACGCCGCGCC GATTCGCGGT GCCGCTGTGG ACGCTGTGGC TGGGGGCGCT TGGGCTGGTC
CTGGCGATCC ATACGGGCCT CTCGATGCAT CTGTCGGGCA AGGCGGAAAG CCTGTTCACC
CAGGCCGCCG GCCTGCCGCC GCCCGACCGC GCCGCGATCT TCCGCCCGGT CCGCCAGACC
GTCGAGCCGG CCCCGGAACT GCCGGCAACC GTGATCGACC CGCTGCTGCC CGCATTCGAG
GCCGCACTGC CCGCCGCCCT GCGCCCGGCC ATGAAGGGGC GCGAGACCTC GGGCCTCGTG
GTGCTGGTGG TGCGGGCCAG CGACCCCGAA GTGTTCCGCT CGGCCAAGGC CAGTCTCAAC
CCGGCCTATC AGCCGCTGGT CGAGGCGATC GGCAGGACCG TCGTCGCCAA TGCCCATCGC
ATCGGCGCGG TCGCGGTCAG CGGCCATACC GACAACGTGC CGGTGCAGCG CAGCAATCCC
TTCGCCTCGA ACCAGGGGCT GTCCGAGGCG CGGGCCGAAA CCGTCGCGCA GGCGCTGGCG
GCGGCCGGCG TGCCCGCCGA ACTCATCAGC GCCGAGGGCC GCGCCGACAG CCAGCCGGTG
GGCGACAACG CCACCCGCGA TGGCCGCGCT CAGAACCGCC GGATCGAGAT CCGCATCGAG
AAGAGGCAAT AG
 
Protein sequence
MGGDPNDPFG LGDPGRTRIR PLGAGRPQSQ PDPPGPMLPR PAWQAPPDPV APEAAPHARR 
GRAHPNPLVA AHATLLELAP ELERANPPAR PDALRARLQS VLVEGRDASV AAGTPLSRAD
QGAWFVAALL DDLALNTPWG GQSDWPRQPL VTQMTGEVDA GTRFFDRLDT LMRNPAGERD
LLELAWLCLC LGFRGKYRVQ GGAGEGALVA LRAQIARLLR DPEREAAPLA PHGAGVVAPD
TPRRFAVPLW TLWLGALGLV LAIHTGLSMH LSGKAESLFT QAAGLPPPDR AAIFRPVRQT
VEPAPELPAT VIDPLLPAFE AALPAALRPA MKGRETSGLV VLVVRASDPE VFRSAKASLN
PAYQPLVEAI GRTVVANAHR IGAVAVSGHT DNVPVQRSNP FASNQGLSEA RAETVAQALA
AAGVPAELIS AEGRADSQPV GDNATRDGRA QNRRIEIRIE KRQ