Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_2452 |
Symbol | |
ID | 4580785 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 2458202 |
End bp | 2459593 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 639769781 |
Product | OmpA/MotB domain-containing protein |
Protein accession | YP_916235 |
Protein GI | 119385179 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.154769 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGGCG ATCCGAACGA TCCCTTCGGC CTCGGCGACC CCGGCCGCAC CCGGATCCGC CCCTTGGGCG CGGGCCGGCC GCAATCCCAG CCCGATCCGC CCGGTCCGAT GCTGCCGCGC CCCGCCTGGC AGGCGCCGCC CGATCCCGTC GCGCCCGAGG CCGCGCCCCA TGCCCGGCGC GGGCGGGCGC ATCCCAACCC GCTGGTCGCC GCCCATGCCA CGCTGCTGGA ACTGGCGCCC GAGCTTGAGC GCGCCAATCC CCCCGCCCGC CCCGATGCGC TGCGGGCGCG GCTGCAATCG GTGCTGGTCG AGGGGCGCGA CGCCTCGGTC GCCGCCGGCA CGCCGCTGAG CCGGGCCGAC CAGGGCGCCT GGTTCGTCGC CGCCCTGCTG GACGACCTGG CACTGAACAC GCCCTGGGGC GGGCAAAGCG ACTGGCCCCG GCAGCCCTTG GTGACGCAGA TGACCGGCGA GGTCGATGCC GGCACCCGCT TTTTCGACCG GCTGGACACG CTGATGCGCA ACCCGGCGGG CGAGCGCGAC CTGCTGGAAC TGGCGTGGCT GTGCCTCTGC CTGGGCTTTC GCGGCAAGTA TCGCGTGCAG GGCGGCGCCG GCGAAGGCGC GCTGGTGGCG CTGCGCGCGC AAATCGCCCG GCTGCTGCGC GACCCGGAAC GCGAGGCCGC GCCGCTGGCC CCGCATGGCG CCGGAGTGGT CGCGCCGGAT ACGCCGCGCC GATTCGCGGT GCCGCTGTGG ACGCTGTGGC TGGGGGCGCT TGGGCTGGTC CTGGCGATCC ATACGGGCCT CTCGATGCAT CTGTCGGGCA AGGCGGAAAG CCTGTTCACC CAGGCCGCCG GCCTGCCGCC GCCCGACCGC GCCGCGATCT TCCGCCCGGT CCGCCAGACC GTCGAGCCGG CCCCGGAACT GCCGGCAACC GTGATCGACC CGCTGCTGCC CGCATTCGAG GCCGCACTGC CCGCCGCCCT GCGCCCGGCC ATGAAGGGGC GCGAGACCTC GGGCCTCGTG GTGCTGGTGG TGCGGGCCAG CGACCCCGAA GTGTTCCGCT CGGCCAAGGC CAGTCTCAAC CCGGCCTATC AGCCGCTGGT CGAGGCGATC GGCAGGACCG TCGTCGCCAA TGCCCATCGC ATCGGCGCGG TCGCGGTCAG CGGCCATACC GACAACGTGC CGGTGCAGCG CAGCAATCCC TTCGCCTCGA ACCAGGGGCT GTCCGAGGCG CGGGCCGAAA CCGTCGCGCA GGCGCTGGCG GCGGCCGGCG TGCCCGCCGA ACTCATCAGC GCCGAGGGCC GCGCCGACAG CCAGCCGGTG GGCGACAACG CCACCCGCGA TGGCCGCGCT CAGAACCGCC GGATCGAGAT CCGCATCGAG AAGAGGCAAT AG
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Protein sequence | MGGDPNDPFG LGDPGRTRIR PLGAGRPQSQ PDPPGPMLPR PAWQAPPDPV APEAAPHARR GRAHPNPLVA AHATLLELAP ELERANPPAR PDALRARLQS VLVEGRDASV AAGTPLSRAD QGAWFVAALL DDLALNTPWG GQSDWPRQPL VTQMTGEVDA GTRFFDRLDT LMRNPAGERD LLELAWLCLC LGFRGKYRVQ GGAGEGALVA LRAQIARLLR DPEREAAPLA PHGAGVVAPD TPRRFAVPLW TLWLGALGLV LAIHTGLSMH LSGKAESLFT QAAGLPPPDR AAIFRPVRQT VEPAPELPAT VIDPLLPAFE AALPAALRPA MKGRETSGLV VLVVRASDPE VFRSAKASLN PAYQPLVEAI GRTVVANAHR IGAVAVSGHT DNVPVQRSNP FASNQGLSEA RAETVAQALA AAGVPAELIS AEGRADSQPV GDNATRDGRA QNRRIEIRIE KRQ
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