Gene Pden_2232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_2232 
Symbol 
ID4579286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp2234982 
End bp2236523 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content64% 
IMG OID639769562 
ProductNADH dehydrogenase subunit M 
Protein accessionYP_916020 
Protein GI119384964 
COG category[C] Energy production and conversion 
COG ID[COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) 
TIGRFAM ID[TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.976155 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACC TTCTTTCCAT CATCACCTTC CTGCCGATCG TCGCCGCCAT CATCATGGCG 
CTGTTCCTGC GCGGCCAGGA CGAGGCCGCG GCGCGCAACG CCAAATGGCT GGCGCTGCTG
ACCACCACGG CGACCTTCGT GATCTCGCTT TTCGTGCTGT TCCGCTTCGA CCCGGCGAAC
ACCGGCTTCC AGTTCGTCGA GGATCACGCC TGGATCATGG GGCTGCGCTA CAAGATGGGC
GTGGACGGCA TCTCGGTGCT GTTCGTGCTG CTGACCACCT TCATGATGCC GCTGACCATC
CTTTCGACCT GGCAGGTCCA GGACAAGGTC AAGGAATACA TGATCGCCTT CCTGGTGCTG
GAAGGGCTGA TGATCGGCGT CTTCACCGCG CTCGATCTGG TGCTGTTCTA CCTGTTCTTC
GAGGCGGGGC TGATCCCGAT GTTCCTGATC ATCGGCATCT GGGGCGGCAA GGACCGCATC
TATGCGTCCT TCAAGTTCTT CCTCTACACC TTCCTCGGCT CGGTGCTGAT GCTGGTGGCG
ATGATCGCCA TGTATCGCAT GGCGGGCACC ACCGACATCC CGACGCTGCT GACCTTCGAC
TTCCCGTCCG AGAACTTCCG CCTCTTGGGC ATGACCGTGG TCGGCGGCAT GCAGATGCTG
CTGTTCCTGG CCTTCTTTGC CAGCTTCGCG GTCAAGATGC CGATGTGGCC GGTCCATACC
TGGCTGCCCG ACGCGCACGT CCAGGCGCCG ACCGCCGGCT CGGTCCTGCT GGCCGCGGTG
CTGCTGAAGA TGGGCGGCTA CGGCTTCCTG CGCTTCTCGC TGCCGATGTT CCCGGTCGCC
AGCGGCGTGG CCCAGCCCTA TGTCTTCTGG CTGTCGGCCA TCGCCATCGT CTACACTTCG
CTGGTGGCGC TGGCGCAGTC GGACATGAAG AAGGTCATCG CCTATTCCTC GGTCGCCCAT
ATGGGCTACG TGACCATGGG CGTCTTTGCC GCGAACCAGA TCGGCGTCGA CGGCGCGATC
TTCCAGATGC TGTCGCACGG CTTTATCTCG GGCGCGCTGT TCCTGTGCGT CGGCGTGATC
TACGACCGCA TGCACACGCG CGAGATCGAC GCCTATGGCG GGTTGGTGAA CCGGATGCCG
GCCTATGCGG CGGTGTTCAT GTTCTTCACC ATGGCGAACG TGGGCCTGCC GGGCACCTCG
GGTTTCGTGG GCGAGTTCCT GACGCTGATG GGGGTCTTCC GCGTCGATAC CTGGGTGGCG
CTGGTCGCGA CCTCGGGGGT GATCCTGTCG GCGGCCTATG CGCTCTGGCT GTATCGCCGG
GTGACGCTGG GCCAGCTCAT CAAGGAAAGC CTCAAGTCGA TCACCGACAT GACCCCGCGC
GAACGCTGGG TGTTCATCCC GCTGATCGCC ATGACGCTGA TCCTGGGCGT CTATCCGCGG
CTCGTCACCG ACGTGACCGG CCCGGCGGTC GCAGCACTCG TGCAAGACTA CAACCAGAGC
CAGCCGGCGG CACCCGTCGC CACGGCCCAA GCCAGCCACT AG
 
Protein sequence
MTNLLSIITF LPIVAAIIMA LFLRGQDEAA ARNAKWLALL TTTATFVISL FVLFRFDPAN 
TGFQFVEDHA WIMGLRYKMG VDGISVLFVL LTTFMMPLTI LSTWQVQDKV KEYMIAFLVL
EGLMIGVFTA LDLVLFYLFF EAGLIPMFLI IGIWGGKDRI YASFKFFLYT FLGSVLMLVA
MIAMYRMAGT TDIPTLLTFD FPSENFRLLG MTVVGGMQML LFLAFFASFA VKMPMWPVHT
WLPDAHVQAP TAGSVLLAAV LLKMGGYGFL RFSLPMFPVA SGVAQPYVFW LSAIAIVYTS
LVALAQSDMK KVIAYSSVAH MGYVTMGVFA ANQIGVDGAI FQMLSHGFIS GALFLCVGVI
YDRMHTREID AYGGLVNRMP AYAAVFMFFT MANVGLPGTS GFVGEFLTLM GVFRVDTWVA
LVATSGVILS AAYALWLYRR VTLGQLIKES LKSITDMTPR ERWVFIPLIA MTLILGVYPR
LVTDVTGPAV AALVQDYNQS QPAAPVATAQ ASH