| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1853 |
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| Symbol | |
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| ID | 4579112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1852399 |
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| End bp | 1855221 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639769173 |
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| Product | DNA polymerase I |
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| Protein accession | YP_915646 |
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| Protein GI | 119384590 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0210712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACG GATTCGGCAA GGGCCATCAC CTGCACCTGA TCGACGGATC GGCCTTCATC
TTTCGCGCCT ATCACGCGCT GCCGCCGCTG ACCCGGCGCT CGGACGGGCT GCCGATCGGG
GCGGTGGCCG GGTTCTGCAA CATGGTGTGG AAATACCTGC AGGACGGCAA GGGATCGGAC
CAGCCGACCC ATGCGGCGGT GATCTTCGAC CATTCGGCGC GGACATTCCG CAACGACATC
TATCCGCTCT ACAAGGCCAA CCGGCCCGAG CCGCCAGAGG ATCTGCGGCC GCAATTCCCG
CTGACCCGCG AGGCGACGCG GGCCTTCAAC ATCGCCTGCA TCGAGACCGA GGGCTTCGAG
GCCGACGACA TCATCGCCTC GCTGGCCTGC CAGGCGCGGG ATGCGGGCGG GCGGGTCACC
ATCATCAGTT CGGACAAGGA TCTGATGCAG CTGGTCGGGG GCGGCGTCGA GATGATGGAC
CCGATCAAGG CCAAGCCCAT CGGTCCTGAC GAGGTGCGCG AGAAATTCGG CGTCGGTCCC
GAGCGGGTGG TGGATGTGCA GGCCCTGGCC GGCGATTCCA TCGACAACGT GCCGGGCGCG
CCGGGGATCG GCATCAAGAC CGCCGCGCAA CTCATCGAGG AATATGGCGA TCTGGAAAGC
CTGCTGGCGC GCGCTGCCGA GATCAAGCAG CCCAAGCGCC GGCAGACGCT GATCGACCAT
GCCGAGCAGA TCCGCATCTC GAAGCGGCTG GTCGAGCTGG ACTGCGGGAT GGTGCTGGAT
TTCACCCTGG AAAGCCTGGA GATCCGCGAG CCCGATCCCG AGGCGCTGCT GGAATTCCTG
ACCCGCATGG AGCTGCGCAC CCTGACCAAG CGAGTGGCCG AGCGTTTCGG GACCGAGCCG
CCGACCATGG CCGAGGTGGC TGTTCCCGCA CCCGCCGCCG GTGCGGACCC GGCGATGCCG
GCCGCGGCCG AACTGCCGGC GATCGACCGC AGCCTTTACA TCACCATCCG CGACGAGGCC
GTGCTGGCCG AGTGGCTGGC CGAGATCGCC GAGAAGGGCG TGGTCGCCAT CGACACCGAG
ACCACGGGGC TGGACGAGAT GCAGGCCGAA CTGGTCGGGG TTTCGCTTTG CACCGGCCCG
GGGCGGGCGG CCTATCTGCC GCTGGGCCAT GTCGACGGGG CCGCCGATCT GTTCGGCTCG
GGCGCGCGGG TCGAGGGGCA GATGGATCTG GACCGTGCGC TGGCGATGCT GAAGCCGGTG
CTGGAGGATC CGTCGGTGCT GAAGATCGGC CAGAACATCA AGTATGACTG GAAGGTGCTG
GCCCGCCACG GCATCCGCAT GGTGCCTTTG GACGACACCA TGCTGCTGTC CTATGCGCAG
AACGCCGGGG CGCACAACCA CGGCATGGAC GAGCTGGCGG ACCTGTATCT GGGCCATCGC
TGCCTGCCGA TCAAGGATCT GATCGGCTCG GGCAAGTCGC AGATCAATTT CTCGCAGGTG
GCCATCGACA AGGCCAGCGA ATATGCTGCC GAGGATGCCG AGGTGACCTG GCGGCTGTGG
CGTCACCTGC GTCCGAAATT GGCGCCGAAC CATGTCACCA CAGCCTATGA ACGGCTGGAG
CGGCCGATGA TCGCGGTGCT GGCCGACATG GAGATGGCCG GCATCCGCAT CGATTCCGAG
CACCTGAAGC GCATGTCCAA CGCCTTTGCC CAGAAGATGG CGGGGCTGGA GGCCGAGATC
CACGAACTGG CCGGCGGGCC GTTCAACGTC GGCAGCCCCA AGCAGCTGGG CGAGATCCTG
TTCGAGCGCA TGGGGCTTGC CGGCGGCAAG CAGGGCAAGA CCGGAGCTTT TTCCACCGGC
GCCGAGGTGC TGGAGGATCT GGCCGCCGAG GGGCATGAAC TGCCGGCGCG GGTGCTGGAC
TGGCGGGCGA TCTCCAAGCT GAAATCGACC TATACCGATG CGCTGCCCTT GCATGTGAAC
CCCGAGACCG GCCGCGTGCA CACCAGCTAT TCCATCGCCG GGGCGCAGAC CGGGCGGCTG
GCCTCGACCG ATCCGAACCT GCAGAACATT CCCGTGCGGA CCGACGAAGG GCGGCGCATT
CGCGAAGCCT TCGTCGCCGC GCCGGGAATG CGGCTGGTGA GCCTGGACTA CAGCCAGATC
GAGTTGCGCA TCCTGGCGCA TGTGGCGCAG ATCCCGGCGC TGCAACAGGC CTTTCGCGAC
GGAATCGACA TCCATGCCAT GACGGCGAGC CAGATGTTCG GCGTGCCGGT CGAGGGCATG
GACCCGATGA TCCGCCGTCG CGCCAAGGCG ATCAATTTCG GGGTGATCTA CGGCATCTCG
GGCTTTGGCC TGGCGCGCAA CCTGCGCATT CCGCGCGCCG AGGCGCAGGC CTTCATCGAC
ACCTATTTCG AGCGCTTCCC CGAGATCCGC GCCTATATGG ATCGCACCGT GGCCGGGGCC
AAGCAGGACG GTTTCGTGCG CACGCTGTTC GGGCGGCGGA TCATGACGCC GGGCATCAAC
CAGTCGGGGC CGGCGGCCGG CGGCGCGCGC CGCGCGGCGA TCAACGCGCC GATCCAGGGC
GCGGCGGCCG ACATCATCCG CCGGGCCATG ATCCGCATGC CCCAAGCCAT CGCGCATCTG
CCGGCCAGGA TGCTGCTGCA GGTGCATGAC GAGCTGGTCT TCGAGGTCGA GGAGGCGGCG
GTTCCCGAGC TGGTCGAGGT TGCGCGCGGC GTCATGCAGG GCGCGGCCGA TCCCGCGGTC
CGGCTGGACG TGCCGCTGAT CGTCGATGCG GGGCAGGGCG CCAACTGGGC CGAGGCGCAT
TGA
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| Protein sequence | MTDGFGKGHH LHLIDGSAFI FRAYHALPPL TRRSDGLPIG AVAGFCNMVW KYLQDGKGSD
QPTHAAVIFD HSARTFRNDI YPLYKANRPE PPEDLRPQFP LTREATRAFN IACIETEGFE
ADDIIASLAC QARDAGGRVT IISSDKDLMQ LVGGGVEMMD PIKAKPIGPD EVREKFGVGP
ERVVDVQALA GDSIDNVPGA PGIGIKTAAQ LIEEYGDLES LLARAAEIKQ PKRRQTLIDH
AEQIRISKRL VELDCGMVLD FTLESLEIRE PDPEALLEFL TRMELRTLTK RVAERFGTEP
PTMAEVAVPA PAAGADPAMP AAAELPAIDR SLYITIRDEA VLAEWLAEIA EKGVVAIDTE
TTGLDEMQAE LVGVSLCTGP GRAAYLPLGH VDGAADLFGS GARVEGQMDL DRALAMLKPV
LEDPSVLKIG QNIKYDWKVL ARHGIRMVPL DDTMLLSYAQ NAGAHNHGMD ELADLYLGHR
CLPIKDLIGS GKSQINFSQV AIDKASEYAA EDAEVTWRLW RHLRPKLAPN HVTTAYERLE
RPMIAVLADM EMAGIRIDSE HLKRMSNAFA QKMAGLEAEI HELAGGPFNV GSPKQLGEIL
FERMGLAGGK QGKTGAFSTG AEVLEDLAAE GHELPARVLD WRAISKLKST YTDALPLHVN
PETGRVHTSY SIAGAQTGRL ASTDPNLQNI PVRTDEGRRI REAFVAAPGM RLVSLDYSQI
ELRILAHVAQ IPALQQAFRD GIDIHAMTAS QMFGVPVEGM DPMIRRRAKA INFGVIYGIS
GFGLARNLRI PRAEAQAFID TYFERFPEIR AYMDRTVAGA KQDGFVRTLF GRRIMTPGIN
QSGPAAGGAR RAAINAPIQG AAADIIRRAM IRMPQAIAHL PARMLLQVHD ELVFEVEEAA
VPELVEVARG VMQGAADPAV RLDVPLIVDA GQGANWAEAH
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