| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1832 |
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| Symbol | |
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| ID | 4578544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1829638 |
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| End bp | 1831500 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639769152 |
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| Product | pepF/M3 family oligoendopeptidase |
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| Protein accession | YP_915625 |
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| Protein GI | 119384569 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.657708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATTT CTGCCCGCAG CCCCCTGGAC CGCACCCTCC ACCGCATGCT GCCGCGTGAC
GAGAACGCCC TGCCCGTCGC AGCCGAGGCC CCCGATCTGG GCGCGCTGCC GGAATGGGAC
CTGAGCGACC TTTACCCCGC CCCCGATTCG CCCGAGCTGA CCCGCGACCT CGAAGCGGTG
GAACAGGCAT GCTGCGAATT CGCCCGCAAC TACGAGGGCA AGCTGGCCTC GCTGGACGCC
GGCAAGATGC TGGACTGCAT CGAACGCTAT CAGCAGATCG ACATCCTGGC CGGGCGGATC
ATGTCCTATG CCGGGCTGCG CTATTACCAG AACACCACCG ATTCGGCCCG CGCCAAGCAG
ATGGGCGACC TTCAGGACCG CATCACCACG GCGACCACCA AGCTCGTGTT CTTCAGCCTG
GAGTTCAACC GCATCCCCGA TGCCCGCTAT GAGGAAGTCT TTGCCGCACC GAACGGCCCG
GCCCGCTACA AGCCGGTCTT CGACCGCATG CGCGCCATGC GCCCCTATCA GCTCTCGAAC
GAGCTGGAGC GCTTCCTGCA CGACAACTCG GTGGTCGGTG CCGCTGCCTG GAACCGGCTT
TTCGACGAAA CCACGGCGGG CCTGACCTTC GACGTGGCAG GCGAGGAACT GGGGCTGGAA
GCCACGCTGA ACCTGCTGAC GGACCACGAC CGCGCCCGGC GCGAGGCCGG CGCCCGTGCG
CTGGTCGAGG TCTTTGGCAA GAACGTCAAG CTTTTCGCCC GCATCCACAA CACGCTGGCC
AAGGAAAAGT CCATCGAGGA CAAGTGGCGC AAGATGCCGA CGCCGCAGAC CGCGCGGCAC
CTGTCGAACC ATGTCGAGCC CGAGGTGGTC GAGGCACTGC GCAACGCCGT CACCGCCGCC
TATCCGCGCC TGTCGCATCG CTATTACCGG CTGAAGGCGA AATGGCTGGG GCTCGACAAG
CTGCAGGTCT GGGACCGCAA CGCGCCGCTG CCGACCGAAA GCCCGCGGCT GATCGCCTGG
CCCGAGGCGC AGGCGACGGT GCTGGATGCC TATGCCGGCT TTTCACCGAA GCTGGCCGAA
CTGGCGCAGC CCTTCTTCGA GCGCGGCTGG ATCGATGCGG CGGTGAAACC CGGCAAGGCG
CCGGGTGCCT TTGCCCATCC GACCGTGACC ACCGTCCACC CCTATGTGCT GCTGAACTAT
CTCGGCAAGC CGCGCGACGT GATGACGCTG GCGCATGAGC TGGGCCACGG CGTCCACCAA
AGCCTGGCGG CGGCACAGGG CGAGTTGCTG GCCGCGACGC CGCTGACGCT GGCCGAGACC
GCCTCGGTCT TCGGCGAGAT GCTGACCTTC CGCGCGCTGC TGGCCAAGAC CACCGACAAA
ACCCAGCGCA AGGCGCTGCT GGCCGGCAAG GTCGAGGACA TGATCAACAC GGTCGTGCGC
CAGATCGCCT TCTACGATTT CGAATGCAAG CTGCACGCCG CCCGCGCCAA GGGCGAGTTG
ACGCCCGAGG ACATCAATGC GCTGTGGATG TCGGTGCAGG CGGAATCGCT GGGCGATGCC
TTCGAGTTCA TGCCGGGCTA CGAGACCTTC TGGACCTATG TGCCGCATTT CGTGCATTCG
CCCTTTTATG TCTATGCCTA TGCCTTCGGC GACGGGCTGG TGAACGCGCT TTACGCCGCC
TACGAGGACG GGCTGCCCGA TTTCCAGGCG AAATATTTCG ACATGCTGGC GGCGGGCGGC
TCGCGGCACC ACAAGGAACT GCTGGCGCCC TTCGGCCTCG ACGCCTCGGA CCCGGCGTTC
TGGGACAAGG GCCTGTCGAT GATCGAAGGC TTCATCGACG AGCTCGAGGC CATGGAGGGG
TGA
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| Protein sequence | MTISARSPLD RTLHRMLPRD ENALPVAAEA PDLGALPEWD LSDLYPAPDS PELTRDLEAV
EQACCEFARN YEGKLASLDA GKMLDCIERY QQIDILAGRI MSYAGLRYYQ NTTDSARAKQ
MGDLQDRITT ATTKLVFFSL EFNRIPDARY EEVFAAPNGP ARYKPVFDRM RAMRPYQLSN
ELERFLHDNS VVGAAAWNRL FDETTAGLTF DVAGEELGLE ATLNLLTDHD RARREAGARA
LVEVFGKNVK LFARIHNTLA KEKSIEDKWR KMPTPQTARH LSNHVEPEVV EALRNAVTAA
YPRLSHRYYR LKAKWLGLDK LQVWDRNAPL PTESPRLIAW PEAQATVLDA YAGFSPKLAE
LAQPFFERGW IDAAVKPGKA PGAFAHPTVT TVHPYVLLNY LGKPRDVMTL AHELGHGVHQ
SLAAAQGELL AATPLTLAET ASVFGEMLTF RALLAKTTDK TQRKALLAGK VEDMINTVVR
QIAFYDFECK LHAARAKGEL TPEDINALWM SVQAESLGDA FEFMPGYETF WTYVPHFVHS
PFYVYAYAFG DGLVNALYAA YEDGLPDFQA KYFDMLAAGG SRHHKELLAP FGLDASDPAF
WDKGLSMIEG FIDELEAMEG
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