| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1816 |
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| Symbol | |
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| ID | 4578528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1810689 |
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| End bp | 1813226 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639769136 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_915609 |
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| Protein GI | 119384553 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0319957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGCGTT TCCTGCTGTC CTTCATCGGC GCGATCTTTT CCTGGCTCGT GACCGCGGTC
TTCTTCATCG CCCTGACCGT GGGCGCGGTG TTCTGGATGT ATTCGCGCGA CCTGCCCAGC
CATGAGCAGC TGGCGCAATA CGCGCCCAAG ACCATCAGCC GGATCTATTC CGCCGAGGGG
CGCCTGATCG ACGAATTCGC CGAGGAGCGC CGCATCTTCG TGCCGATCGG CGACATTCCG
CCGCTGGTGA AGCAGGCTTT CGTCAGCGCC GAGGACAAGC ATTTCTACAG CCATCACGGC
TTCGACCCGA TGGGCATGGG CAAGGCGGTG CTGGATGCGA TCAGCTCGGG CGGGCGCAAC
CTGCGCGGCG CCTCGACCAT CACCCAGCAG GTGATGAAGA ACTTCCTGCT GTCCAGCGAC
CGCAGCGTCG AGCGCAAGAT CAAGGAACTG ATCCTGGCGA CGCGGCTGGA GGCGACGCTC
AGCAAGGACC AGATCCTTGA ACTTTATCTC AACGAGATCT TCCTGGGCCA GAACAGCTTC
GGCGTGGCTG CGGCGGCGCA AAGCTATTTC AACAAGCCGC TGACCGAACT GGCCCCGCAT
GAGGCCGCGA CGCTTGCCGC CATGCCCAAG GCGCCCAGCC GCTATCACCC GGTCACCGCC
AAGGAGGCCC TGACCGAGCG GCGCGACTAC GTCCTGCGCG AGATGTGGCA GAACGGCTAT
ATCGACAAGG CGACCTATGA AGCCGAGGCG CAGCAGCCGT TGCGTTCGGT GCAGAACGGC
GACTTCCCCG CCTTCCGCGA GCAGTTGCCG CAGCGCGATT ATTTCACCGA CGAGATTCGC
CGCCAGCTTT CGGCGCAGTT CGGCGCCGAG GAATTCTTCG GCGGCGGTTT GGCGATCCGG
GCGACCGTCG ACCCCAAGCT GCAAAAGGTC GCCGCGCACG CGCTGCAACA GGCGCTGGAG
AAATACGACC GCGGCCGCGG CGTCTGGCGC GGCACCCGCG TCACGATCCC CGCCGAGCAA
CTGGACAGCG AGCAGGAATG GCGCGCCGCG CTTGCCGATG CCAGCGTGCC GCGCGACATC
GAGGGCTGGT TCCCGGCCGT GGTGCTGTCG CTGGAGGGCG GCGACGCCTC CATCGGCATC
GAGGATCAGG AGGGCATCGC CACCATCCCG GCCAAGGACG TGCAATGGGC AAGGAAACGC
CGCGCCGACG GCACGCTGGC GCCCAAGGCC AAGGTGGCCT CGGACCTGCT GGAGCTGGGC
GACGTGGTGC TGGTGCGCCG CATGACCAGC GACAGCGACG GCAGCTTCAT CCGCTGGACC
CTGCGGCAGG TGCCCGAGGT GCAGGGCGGT TTCATGGCCA TGGACGTCAA TACCGGCCGG
GTCATCGCCA TGCAGGGCGG CTTTTCCTAT CAAAGCTCGG TCTTCAACCG GGCGACGCAG
GCGCAGCGCC AGCCGGGCTC CAGCTTCAAG CCCTTCGTCT ATGCCGCCGC GCTGGATTCG
GGCTTCAACC CGGCGACCAT CGTGGTGGAC GAGCCGATCA CCGTGAACAC GCCCCAGGGG
CTGTGGACGC CCAAGAACGC CAGCGGCAAG TTCTATGGCC CGACCCCCAT GCGCACCGGG
ATCGAGCAGT CCCGGAACCT GATGACCATC CGCATCGCCC AAGGCATCGG CATGGACACG
GTGGCGAAAT ATGCCGAGAA ATTCGGGGTC TACGACCACC TTGGCCATTT CCTGGCGAAC
AGCCTCGGTG CGCAGGAAAC GACGCTGTTC AAGATGGTCG CGGCCTATGC CATGTTCGCC
AATGGCGGCG AGCGGGTCGA GCCGACGCTG GTAGACCGCG TTCAGGACCG CCGCGGCCGC
ACCATCTATC GCCACGACCG CCGCGAATGC GTGACCTGCG GCCAGCCGAC GCTGCCCGCC
GGCGCCGCGC CCGAGATCCG CTCGAACCGC GAACGGGTGA TGGACGCGAT CACCGCCTAT
CAGCTGACCT CGATGCTGGA GGGCGTGGTC AAGCGCGGCT CGGGGCGTGG GGTGAACCTG
CCGGTGCCGG TCGCCGGCAA GACCGGCACC ACCAACGACG CCAAGGACGT GTGGTTCATC
GGCTTTACCT CGAACATCGT CGCCGGCTGC TACCTGGGCT ATGACCAGCC GCGCACGCTG
GGCGCCAACG CCTATGGCGG CACGCTTTGC GTGCCCGTCT TCAACGAGTT CATGCAAGAG
GCTGTCAAGG AATTCGGCGG CACCGTCTTC AAGGTTCCGC CGGGCGGGCA TTTCGTCAAC
ATCGACCGCT TCAGCGGCGC GATCCTTGGC CCGGATGCCA AGGGCGACAA CGTGATCGCC
GAATATTTCC GCGATGGTCA GAACCTGACC GGCCTGATGC TGGTCGATGG CGGCTTCGGC
CGCGCCGATC CGGGCACCTT GCCGCTGTTC ACGCAGGCAC GCGATGGCGG GCAGGCGGTG
ACCACCTCGA CCGGCCAGAA GAGGGTGATC CCGAAAAAGG CCGATTTCGG CACCCTGTCC
TCGGGCGGGC TGTATTGA
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| Protein sequence | MLRFLLSFIG AIFSWLVTAV FFIALTVGAV FWMYSRDLPS HEQLAQYAPK TISRIYSAEG
RLIDEFAEER RIFVPIGDIP PLVKQAFVSA EDKHFYSHHG FDPMGMGKAV LDAISSGGRN
LRGASTITQQ VMKNFLLSSD RSVERKIKEL ILATRLEATL SKDQILELYL NEIFLGQNSF
GVAAAAQSYF NKPLTELAPH EAATLAAMPK APSRYHPVTA KEALTERRDY VLREMWQNGY
IDKATYEAEA QQPLRSVQNG DFPAFREQLP QRDYFTDEIR RQLSAQFGAE EFFGGGLAIR
ATVDPKLQKV AAHALQQALE KYDRGRGVWR GTRVTIPAEQ LDSEQEWRAA LADASVPRDI
EGWFPAVVLS LEGGDASIGI EDQEGIATIP AKDVQWARKR RADGTLAPKA KVASDLLELG
DVVLVRRMTS DSDGSFIRWT LRQVPEVQGG FMAMDVNTGR VIAMQGGFSY QSSVFNRATQ
AQRQPGSSFK PFVYAAALDS GFNPATIVVD EPITVNTPQG LWTPKNASGK FYGPTPMRTG
IEQSRNLMTI RIAQGIGMDT VAKYAEKFGV YDHLGHFLAN SLGAQETTLF KMVAAYAMFA
NGGERVEPTL VDRVQDRRGR TIYRHDRREC VTCGQPTLPA GAAPEIRSNR ERVMDAITAY
QLTSMLEGVV KRGSGRGVNL PVPVAGKTGT TNDAKDVWFI GFTSNIVAGC YLGYDQPRTL
GANAYGGTLC VPVFNEFMQE AVKEFGGTVF KVPPGGHFVN IDRFSGAILG PDAKGDNVIA
EYFRDGQNLT GLMLVDGGFG RADPGTLPLF TQARDGGQAV TTSTGQKRVI PKKADFGTLS
SGGLY
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