| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1747 |
|---|
| Symbol | |
|---|
| ID | 4581257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1735334 |
|---|
| End bp | 1737181 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639769062 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_915540 |
|---|
| Protein GI | 119384484 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.219257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.123618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCA TCGACGACAT ATCCTATTCC ATCGCCGGAC GACCGCTGTT CGAGCACGCC
TCGGCCACCA TCCCCGACGG CCACAAGGTC GGCCTGGTCG GCCCGAACGG CGCCGGCAAG
ACCACGCTGT TCCGGCTGAT CCGGGGCGAG CTGTCGCTGG ACGGCGGCGC CATCACCCTG
CCGCCGCGCG CCCGCATCGG CGGCGTGGCG CAGGAAGCGC CGGGCACCGC GACAAGCGTG
CTGGACACGG TGCTGGCCGC CGATGCCGAG CGCGCCGGGC TGATGGCCGA GGCCGAAAGC
GCCACCGACC CCGCCCGCAT CGCCGAGATC CAGACCCGGC TTGCCGACAT CGACGCCTGG
TCGGCCGAAG CGCGGGCCGC GACCATCCTG CGCGGCCTGG GATTCTCGAC CGAGGACCAG
GCGCGGCCGA CCGCCGATTA TTCCGGCGGC TGGCGGATGC GCGTGGCGCT GGCCGGCGTG
CTTTTCTCGC AGCCCGACCT GCTGCTTCTG GACGAGCCGA CCAACTATCT AGACCTGGAA
GGCGCGCTGT GGCTGGAAAG CTATCTGGCG CGCTATCCCC ATACCGTCAT CGTCATCAGC
CACGACCGCG ATCTTCTGAA CCGCGCCGTC GGCCATATCC TGCATCTCGA GGAACGCAGG
CTGGTGCTGT ATACCGGCGG CTACGACAGC TTCGCCCGGA CGCGGGCCGA AAAGCGCGCC
CTGCAAGCCG CCGAGGCGAA GAAGCAGGAT GCCCGCCGCG CCCATCTGCA AAGCTTCGTG
GACCGTTTCC GCGCCAAGGC CACCAAGGCC CGGCAGGCTC AGGCCCGCAT CAAGATGCTG
GAGAGGATGG AGCCGATCAC CGCCCCCGAA GAGGCGAGGT TCCACCGCTT CGGCTTTCCG
CAGCCCGACC AGCTGTCGCC GCCCATCGTC TCGCTGGACG GGGTGACGGT GGGCTATGAC
GGGCGGGCCG TGCTGCGCCG GCTGAACCTG CGCATCGACC AGGACGACCG CATCGCGCTT
CTGGGCCGGA ACGGCCAGGG CAAGTCCACG CTGTCCAAGC TGCTGGCCGG CCGGCTGGAG
GCGATGGAGG GGCGGATCGC GCGCTCGGGC AAGCTGCGCA TCGGCTATTT CGCCCAGCAT
CAGGTCGATG AGCTGGAGTT GGGCGAGACG CCCATCGCCC ATGTCCGCCG CCTGCGCCCG
GACGAGCCGC CGGCGAAGCT GCGCGCCCGT CTGGCGGGAT TCGGGTTGAT GGAGGCGCAG
GCCGAGACCC GCGTCGGCCA GCTTTCCGGC GGGCAGAAGG CGCGGCTGTC GTTGCTGCTG
GCCACCATCG ACGCGCCGCA TCTGCTGATC CTGGACGAGC CGACCAACCA CCTGGACATC
GAAAGCCGCG AGGCGCTGAC CGAGGCGCTG AACGACTATA CCGGCGCCGT GGTGCTGGTC
AGCCACGACA TGCACCTGCT GAACCTGGTG GCGGACCGGC TGTGGCTGGT CGATCAGGGC
GCGGTCAGCC CGTGGCAGGG CGACCTGGAC GATTACCGTC GCATGCTGCT GGCCGGCGAG
GAGAAACCCG AGCCCAAACC CGAGGCGAAG CCGGCGCCGA AACGCCCGCC GCGCGAAAGG
ATCATGGAGT TGCGCGCCGA GGCGAGACGC GCCGAGGAAC GGGTCGGAAA ACTGACCGCC
ATGCTGGAAA AACTGGACGC CATCATGGCT GATCCCGCGA CCTATGGCGA CGCCCAGAAG
GCCGAGGCCT GGGGCCGCAA GCACGCCGAG GCCAGCGAGG CGATGCTGCG GGCGGAAGGC
CTGTGGATGG AGGCACTGGA ACGGCTGGAG GAAGCCGAGC GGGCCTGA
|
|---|
| Protein sequence | MLRIDDISYS IAGRPLFEHA SATIPDGHKV GLVGPNGAGK TTLFRLIRGE LSLDGGAITL
PPRARIGGVA QEAPGTATSV LDTVLAADAE RAGLMAEAES ATDPARIAEI QTRLADIDAW
SAEARAATIL RGLGFSTEDQ ARPTADYSGG WRMRVALAGV LFSQPDLLLL DEPTNYLDLE
GALWLESYLA RYPHTVIVIS HDRDLLNRAV GHILHLEERR LVLYTGGYDS FARTRAEKRA
LQAAEAKKQD ARRAHLQSFV DRFRAKATKA RQAQARIKML ERMEPITAPE EARFHRFGFP
QPDQLSPPIV SLDGVTVGYD GRAVLRRLNL RIDQDDRIAL LGRNGQGKST LSKLLAGRLE
AMEGRIARSG KLRIGYFAQH QVDELELGET PIAHVRRLRP DEPPAKLRAR LAGFGLMEAQ
AETRVGQLSG GQKARLSLLL ATIDAPHLLI LDEPTNHLDI ESREALTEAL NDYTGAVVLV
SHDMHLLNLV ADRLWLVDQG AVSPWQGDLD DYRRMLLAGE EKPEPKPEAK PAPKRPPRER
IMELRAEARR AEERVGKLTA MLEKLDAIMA DPATYGDAQK AEAWGRKHAE ASEAMLRAEG
LWMEALERLE EAERA
|
|---|
| |