| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1569 |
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| Symbol | |
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| ID | 4580871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 1542634 |
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| End bp | 1544238 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639768885 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_915365 |
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| Protein GI | 119384309 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.199164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0577205 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGAC TGTTCCTGAC GACCGCATTG GTTGCAGGCC TGGCCCTGCC CGCACTGGCG
GTCCAGCCCG CCGAGGGCGA GAAGCTGGCC GAGAACCAGT CCTATACCTT CTGGCTGCTG
GACGCGATCA AGACCGCCGA CCCGCAGAAG AACACCGATG TCGAGGGCTC GGACATCATC
CGCCAGCTGT TCGAGGGCCT GCTGAACGAG GACGACAAGG GCGCGCCGGT CCCCGGCGTC
GCGAGCGGGT TCGACCTGTC CGAGGACAAG CTGACCTATA CCTTCCACCT GCGCCCCGAG
GCGAAATGGT CGAATGGCGA TCCGGTCGTA GCGGGCGATT TCGTCTATGC CTGGCGGCGG
CTCGCCAATC CCGAGACCGC CTCGGAATAT GCCTGGTTCA TGGAGCTGAT GAACGTCGAG
AACGCCAGCG CCGTGGTCAA GGGCGAGAAG CAGCCCGAGG AACTGGCCGT CAAGGCGCTG
GACGACCACA CGCTGGAGGT CAGGCTTTCC ACGCCGACGC CCTATTTCCC CAAGATGGTC
ACGCATGGCT CGACCTTCCC GGTCAACCAG AAGGTCGTCG AGGCCGAGGG CGACAACTGG
ACCCAGCCCG GCAAGCTGGT CGGCAACGGC GCCTATGTGC TGAAAAGCCA CGACCTGGGC
GTGCAGATCA GCATGGAGAA GAACCCGGAA TACTGGGACG CCGCCAATGT CGTGATGGAG
CGGATCAAGG GCCTGACGGT GAACGACAAC AACGTCGCGC TGACCCGCTA TCAGGCGGGC
GAGCTGGACC GGGTGCAGAT CCCCGCCGGG CAATATCCGC GGCTCAAGGA GCAGTTTCCC
GACCAGGCGA TCTCGATTCC CTATTCCTGC ACCTATGCCT ATCTGCTGAA CGTCAGCGAG
AAAGGCCCCG AGGCGCTGAA GGACGTGCGG GTGCGCAAGG CGCTCAGCTA TGCCATGCAG
CGCGACGTGG TGGTGAACCA GATCCTGCAG GGCGGCCAGA AGCCCGCCTA TAACTGGTCG
CATTGGGCCA TCGAGGGCTT CCAGATGCCC GAGATCGACT ATGCGGGCTG GTCCCAGGCC
GAACGGCTGG AAAAGGCCAA GGCGCTTCTG GCCGAGGCCG GCTACGGCCC CGGCAAGCCG
CTGAAGCTGA CCCTGCAATA CAATACCGAC GAGAACCACA AGAAGATCGC CGTCGCCGCG
CAGCAGTTCT ACAAGCAGAT CGGCGTCGAG CTGACCCTGA ACAACGTGGA ATGGAAGGTG
CATACCGACC GCATGCAGTC GCAGGATTTC GAGATGGCCC GCTATGCCTG GTGCGCCGAC
TATAACGAGG CCTCGACCTT CCTCGACTAT TTCCGCAGCA CGGGCATGAA CTACGGCAAG
TATTCCAACC CGGAATTCGA CAGGCTGATG GATCAGTCCA AGACCTCGGA AGACCCGAAC
GCGCAATATA CCGCGGCCGA GAAGATCCTG GCCGAGGACA TGCCGCTGGT CCCGGTCTAT
CAATATTCCA AGGTCGACAT GATCCGCGAC GACATCAAGG GCCTGCCGAC CGAGAACGTG
ATGAACGACT GGTATGCCAA GGACATCTAC CGCATCCAGA AATAA
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| Protein sequence | MTRLFLTTAL VAGLALPALA VQPAEGEKLA ENQSYTFWLL DAIKTADPQK NTDVEGSDII
RQLFEGLLNE DDKGAPVPGV ASGFDLSEDK LTYTFHLRPE AKWSNGDPVV AGDFVYAWRR
LANPETASEY AWFMELMNVE NASAVVKGEK QPEELAVKAL DDHTLEVRLS TPTPYFPKMV
THGSTFPVNQ KVVEAEGDNW TQPGKLVGNG AYVLKSHDLG VQISMEKNPE YWDAANVVME
RIKGLTVNDN NVALTRYQAG ELDRVQIPAG QYPRLKEQFP DQAISIPYSC TYAYLLNVSE
KGPEALKDVR VRKALSYAMQ RDVVVNQILQ GGQKPAYNWS HWAIEGFQMP EIDYAGWSQA
ERLEKAKALL AEAGYGPGKP LKLTLQYNTD ENHKKIAVAA QQFYKQIGVE LTLNNVEWKV
HTDRMQSQDF EMARYAWCAD YNEASTFLDY FRSTGMNYGK YSNPEFDRLM DQSKTSEDPN
AQYTAAEKIL AEDMPLVPVY QYSKVDMIRD DIKGLPTENV MNDWYAKDIY RIQK
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