| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1472 |
|---|
| Symbol | |
|---|
| ID | 4580293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1434342 |
|---|
| End bp | 1435595 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639768787 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_915268 |
|---|
| Protein GI | 119384212 |
|---|
| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4976] Predicted methyltransferase (contains TPR repeat)
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.773067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGTA TCAAGCGTCG CCGTACCGCA GAAGCTCTGA GCGCCTATGC CGCAGGACGC
TACTCAGCGG CGGAAACCGT CTGCGTGCGC ACACTCATGG ACTACCCTAA CGACCCGGAC
CTGCTTCACC TGCTCGGGGT CGCACGGCTC GCTCATGGTA GCATCACCGC GGCGATCGAG
GCCCTCGAGG CCGCGTGCGT ACATGCACCG GTACCCTCGC CGGAAGCTTA CAACAATCTC
GGCATAGCTC TGCGTAAGGG GCAGCGGCCT GAAGACGCAA TTGCAGCCTT CAGGAAGGCC
ATCGAAACAC GGCCCGGATA TGCGGAAGCG ATGTACAATT TGGCTGTCAC CTCAATGGAT
CTGGCGGATT TTTCTACAGC AGCCGACCTT CTCGCCGAAG TCACCGCTGT CAGTCCCGCA
GATGCGCGGG CGCATTTCTC TTTGGCAGAC GCTTTGATCG CCTTAAACGA TCTTGACGCG
GCAGCGCTGT CATTGCATCG CTACCTTCGC CTCGCCCCCG GAGACGAGCA CGGCGCTGAA
CTGCTTCTTG CATTCATTGG CAAGGGGCCA GTTCCAGCTA GCGCATCCCC CGCCTTTCTG
CGTGACCTCT ACCGGCGAAA GGCGAAGAAT TGGGACCTGG TCCCGGGCTA TTTCGCGCAT
CGTCACGTCC TGGATGCCGT TCTCCGCCAC GCGTCCCCGC CCTTCTTCTC GGCCCTCGAT
GCCGGATGTG GCACAGGTCT CTCCGGCGCC GGCTTCCGCG CGATGACCCA GCACATGGTG
GGGGTCGACG TCTCACCGGA CATGCTTGAG GGCACCCGCG CGAAGGGCAT CTATGACCTT
CTGAACGAGG ATGATCTGCT TTCTTTTCTG ACCCGGCATC CAGACCGATT TGACCTGATC
GTCTCGGCGG CGGCACTCAT CCATTTTGGA GACCTGAGCC CCGTCTTCGA AGCAGTGTGG
CTGGCCCTTC GTTCGGAAGG AACATTCGCT TTCACCACCT ATTCATATGA CGGTTCCGAC
CCAACCGCCT TTGGTGCGTC GAGCTATCGG GAACTCGCAA AGGCGGGATG TTTCGCGCAT
GGCAGCGCCT ACCTGGCTGA CCTATCCAAA ACCTGCGGTT TCGAGATCTG CGAAGTCAGC
GAGATCATCC ATGAGCAAAG CTCCACGCAG AACATCCCGG GTTTCGTCGC GGTGCTGCGC
AAGAGGAACG GCGTCGAAGG CCCCCTAATC AACAGCCCCT TGCCGGGCCA TTGA
|
|---|
| Protein sequence | MDSIKRRRTA EALSAYAAGR YSAAETVCVR TLMDYPNDPD LLHLLGVARL AHGSITAAIE
ALEAACVHAP VPSPEAYNNL GIALRKGQRP EDAIAAFRKA IETRPGYAEA MYNLAVTSMD
LADFSTAADL LAEVTAVSPA DARAHFSLAD ALIALNDLDA AALSLHRYLR LAPGDEHGAE
LLLAFIGKGP VPASASPAFL RDLYRRKAKN WDLVPGYFAH RHVLDAVLRH ASPPFFSALD
AGCGTGLSGA GFRAMTQHMV GVDVSPDMLE GTRAKGIYDL LNEDDLLSFL TRHPDRFDLI
VSAAALIHFG DLSPVFEAVW LALRSEGTFA FTTYSYDGSD PTAFGASSYR ELAKAGCFAH
GSAYLADLSK TCGFEICEVS EIIHEQSSTQ NIPGFVAVLR KRNGVEGPLI NSPLPGH
|
|---|
| |